RNA id: TU560637


Basic Information

Item Value
RNA id TU560637
length 253
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G488651
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3525348 ~ 3525600 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTTGTTTGCAGGAGCGAGAATAAAACTTTGTTAGAATGGTGATGGGTTTTGGAACCTGCGCTCAGCTGTAATTATGGGATAAATTTGATGAGACGCCACATTTAAGAGCAGCAGAAAATAAACAGATGCTAAATCCGATAAAAGCGTTGAAAAAAATGGCGACTGTGAGGGTTTACTAACAAGCAGATGAAGCAAGAGGATGTTCCAGAAGAGGTTAGGTTAACATTAGTATTTGCTTTTGTGTACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560635 lncRNA downstream 3752 3521372 ~ 3521596 (-) True G488649
TU560631 lncRNA downstream 7592 3517505 ~ 3517756 (-) True G488645
TU560629 lncRNA downstream 10381 3514465 ~ 3514967 (-) True G488643
TU560516 lncRNA downstream 52046 3465312 ~ 3473302 (-) False G488543
TU560515 lncRNA downstream 52046 3470929 ~ 3473302 (-) True G488543
TU560649 lncRNA upstream 17862 3543462 ~ 3544050 (-) True G488663
TU560650 lncRNA upstream 18779 3544379 ~ 3544596 (-) True G488664
TU560561 lncRNA upstream 92419 3618019 ~ 3621632 (-) True G488582
TU560567 lncRNA upstream 337552 3863152 ~ 3863573 (-) True G488588
TU560547 lncRNA upstream 342204 3867804 ~ 3869876 (-) True G488568
CI01000340_03500913_03512175.mRNA mRNA downstream 12653 3500331 ~ 3512695 (-) True CI01000340_03500913_03512175
CI01000340_03474617_03478517.mRNA mRNA downstream 46831 3473960 ~ 3478517 (-) True CI01000340_03474617_03478517
CI01000340_03406706_03449487.mRNA mRNA downstream 75861 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
CI01000340_03403238_03403692.mRNA mRNA downstream 121656 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03379959_03401892.mRNA mRNA downstream 123396 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03528645_03535760.mRNA mRNA upstream 2700 3528300 ~ 3535960 (-) True CI01000340_03528645_03535760
CI01000340_03561521_03596697.mRNA mRNA upstream 35879 3561479 ~ 3596697 (-) True CI01000340_03561521_03596697
CI01000340_03607549_03614126.mRNA mRNA upstream 81530 3607130 ~ 3614126 (-) True CI01000340_03607549_03614126
CI01000340_03622734_03659141.mRNA mRNA upstream 96370 3621970 ~ 3659156 (-) True CI01000340_03622734_03659141
CI01000340_03670820_03675367.mRNA mRNA upstream 145113 3670713 ~ 3675367 (-) True CI01000340_03670820_03675367
TU559770 other downstream 1623076 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2733939 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 3199632 325334 ~ 325716 (-) False G485786
TU557450 other downstream 3199685 325334 ~ 325663 (-) True G485786
TU557403 other downstream 3443253 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 480205 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 981596 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1074620 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 1795153 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2657690 6183290 ~ 6220642 (-) True G489516

Expression Profile