RNA id: TCONS_00022102


Basic Information

Item Value
RNA id TCONS_00022102
length 2516
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id XLOC_010427
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6605385 ~ 6635296 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGTTCAGGAAGCAGCTCCAGAAGTGTCGGGTCCTCGTCCGATCTCAGCTGCTGTGGCTTCGCTTGCTTCCGACGGGACATTCTTCAGCTGCGATATCTTCCTCATTCACAAACATCAGCAGAGATccgctgaaaaaaaatcttctcaaaAAGTCAAGCTGTAAAATAGCGCAGATGATCTTCTGTTATGTGGATGTATCATTATGATAGTGAATGATACTTTGAATTGGCAGAGCTCCAGTGGGCACACTGATATGGAAATGAGGGACGGACTCCGCAATTTACTACTTCACCTTCAAACATCACCATCCACCCAAAATCACCTCTAACgcccagaggaggaggagggtcaATTGTTTTCTTTTCTCTGTGGGGTTTTTCCTCTGTACTTCATTTTAGCATGATTTTACTCTGAACTTCGGACGGTTTATGTATATTCCCAACAGTTAGTGGAGTGAGAGGAAAGTGAGTTGTACGGGCTGCTCCGGTTCAGAATAACTTTTCTTCTTTGTAAAGGTTCGTTTCGTCCATTAGTTGATACAATGAACGATTAACACAGTCATCTCtgagcaaaaaagaaaaagaaaagcacactTCGTCCTCGGATGTTACCAATTTTTCCAGTGTCAGCAAACTGAAGTTTACTACGGATTCTGCGGTGGTTTTTGTCTTCCTCAAGCCCGTTTAAGGACTCTCGCTCCAGGCCTACAAATCAGCTCGAATCGTTAAAAGAAGGTTCGCGAAACAAACCGGCGTTTCATCTGAGGTTTTCAGGTGTGCATTCGGCTGGGTGATGATGCGGCAGCCGCAGAAGTTTGATAGTTCTCGGTGATGGCGCTGGAGaggtgtgtgtccgtgtgtgagACTGTGTGTCGAGTGTGAGGGATTTGCCGAAGGTTTGAACTGAGCCCATTGCGGGGAGCGACCGCTAGGATGTAGCAGGACACACCAATTCACCTCAGCCCGTCATCTGATGCTCTGACTGCTTGAAATTGACCTGATAAAATTACTCAGTGTATCTTATTAGGAGAATTACATTTGGTCTATGAATATGCGCATGGAAAACATGCGATAAcgatttaaattctttaaaaaatcaatTAGACAAAAGAAGAACACATGTTCATTTGTATGAGGATTATAATTAGTTTACAATTTAGTTTTTCCTTCATTATTGATATAGGAACTTTATTTGTTGACCCTTTTATTTATGGTTTGACCCTTTTATTTATGGTAGGCTATATGCATATAAttgttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgttatgaCGTAGGACTACGCATCGGACAAAAAGTTTCTTTTAGAGCAGGTttatcacacttttttttcttctaaccTTTCACCTTTCCAAAAGTTGTGTTCAAAAACATTCAATCTTCTATTAATACATGCAGAAGACAAAATCAACCGCTGATAATTGCAGGAGTGTAGCTCAGGTCCTGTATCGATCGGCGTGTCCTGCTATAGAGAGATAAGAACCCTCACTCTTTACTGCAATATCATTTCTTTTGACCTATCTGCTCGCTACAGACTTATGATGAATAGCCGAAGCAGCTAAAGTCTTTTATCACGAGAGTATCCCCTTGATATAAAATTGATTCTTTATAACTAACTTGACACACAGAAACCAAAACGCCCACTTTGCTATTCTCAACAATATCAATATCTTACTGCAGGTCTTCTCTTTATGTATAGGACTATGATGATGAAAGTAGACAAAATCTTCATTAAATCTTTATTTAGTCaccataaataataatttttaataattttttttccaaaacaagaaaaaatacttATCAGATATCATGTTTAACGTGTTACACATTTTCTATATAGATGTAAAACAGCGTTTGAGGCAGCAGAAATTACCTTAAAAATGTGTGAGCAGTGTGAAAGTCAGGGAGGCGAGGGGATTGAATGGGGAGGGTGTGCTCTCAGTATTCAGCGGTCTAGACGAACAGCAAATGTGCTTTAGCCTAACGAATCCGCTTAAAGCTCTACGAACTGTTCGTAAAGGCAGGCAAAGCACCGATACGGTGTTGTTTATTGTATTCGTTGATTCTTCAGCGATGGATGTGATGAGCTCAGAAGTCAAAGAGAACAGAAGGCAAATCTGAACCGCGACTTGAATCACAGCGACACTTGCCAGGATAGAAGACAGAGAGGCCGTGAATGAGGAACTTTCCTCAGATTGCTGCTATTCTCCAGTTTATTGCATCCTGTCACTGGTAGTTTCAGCTGATGTCCAGTACAGCAGTCCTGCTCAGGCCAGTAAAATAGCTGCTTAACAATGAACAACGGAGGGGGGGGAAACAACGCAGAGTAAGACAGAGCACAcaatatattgcatttttttaactCACTACATTCTTTGCTCTGTGAAACTGTTAAATAACtgtgttattaaaaacaaacttaagtATTCTTTAATGATGCATTTTTCTGCACATTTAATGAAAGAAATCACCCAAACGGAAT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0021703 locus ceruleus development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020484 lncRNA downstream 34678 6588022 ~ 6591170 (-) False XLOC_010426
TCONS_00022100 lncRNA downstream 34977 6589603 ~ 6590871 (-) True XLOC_010426
TCONS_00020486 lncRNA downstream 35085 6588022 ~ 6590763 (-) False XLOC_010426
TCONS_00020487 lncRNA downstream 35418 6589603 ~ 6590430 (-) False XLOC_010426
TCONS_00020485 lncRNA downstream 35496 6588022 ~ 6590352 (-) False XLOC_010426
TCONS_00022103 lncRNA upstream 12734 6648030 ~ 6651719 (-) True XLOC_010428
TCONS_00022104 lncRNA upstream 566799 7202095 ~ 7214679 (-) False XLOC_010432
TCONS_00022105 lncRNA upstream 872805 7508101 ~ 7621115 (-) False XLOC_010436
TCONS_00022106 lncRNA upstream 915975 7551271 ~ 7554300 (-) False XLOC_010436
TCONS_00022107 lncRNA upstream 915975 7551271 ~ 7579989 (-) False XLOC_010436
TCONS_00020478 mRNA downstream 201030 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA downstream 201032 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020477 mRNA downstream 234573 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020476 mRNA downstream 248176 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020474 mRNA downstream 420058 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020489 mRNA upstream 168174 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 168249 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020491 mRNA upstream 185152 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020492 mRNA upstream 185152 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020494 mRNA upstream 301890 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020473 other downstream 755159 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 767867 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1518431 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1564219 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1906463 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 193256 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 584696 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1058585 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1059498 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1652475 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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