RNA id: TU560762


Basic Information

Item Value
RNA id TU560762
length 959
lncRNA type intronic
GC content 0.40
exon number 1
gene id G488772
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3987889 ~ 3988847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACAGTTAAACCAAACCAAACTGAAAACAAACCGAAAACAAACCAAAACTAATTGAAAACAAACCAAAAAAACCAAAGCCGAACTAAAACTAACTGAATACAAACCAAAAAACCAAACCCAAACAAACCAAACCAAACCAAAAACAAACCAAAACTAACCAAAAAAACAAAAACCAAAACAAACCAAAAAACCAAACCAAACCCAAACAAACCAAACTGAAAACCAAACCAAAACAAAAAAGAGACATGGTAATGGTAGAAAAAAAAAATTGACGTGAGGAAAAACTATATATTTCAATGCTTTTGCATTCTCTCACAAAACTTTTGCGTTCCCCTGAAAAAAAGTGTCCGCTCGTAAAACTCGCAAACAAAACAAAAATTGGAAAACTTTTAAAAAGAAACAAGGCGTATGCTGCAGCTACTTTGCAGTTAAACTGGACAGTTCAAATCTGTGCATATTTCAGTATGAAAGTACATAACAAATGTAACAATAGCAAAAATATAAACTTACACCTTTAAAAGCATGTCCGTAAAGCTCTGCAATTAAAAAGGAGGATGTTACTGCGGAGGCAATATTTTCCTCCTCTTGTCCCTTTCGTCTGTCCTGTGATTTACATGCACGGCTCAAAGTCATTCTGTCTGGAGCAAACGCGTCCTGTGGGCATGCATTCCACAAACCTGTTTCACATATATAATACTAACTATTACCCACCAGCAACTGCAGCTGCATTCTCTTGGTCCTCCTAATGCTACTGATCAGACGTCGTCCCATCTTTTTTGCGTACCAAATAGAGGCCAGCATGTCACTTACGAGTCCGGAGGTGAAACCCAGCACAGCGTGGCATCCAGGGTTTGACAGACCACCCGATACAGCAGGGTACTCCTCAGCTCTGATCCGAACTCCCCACCCACCCCCAGAAGCTGCGTCAAGGTGATCCCATGATGCAGTGCACGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560761 lncRNA downstream 1671 3985972 ~ 3986218 (-) True G488771
TU560760 lncRNA downstream 2618 3984745 ~ 3985271 (-) True G488770
TU560562 lncRNA downstream 29061 3951206 ~ 3958828 (-) True G488583
TU560548 lncRNA downstream 36773 3950424 ~ 3951116 (-) True G488569
TU560558 lncRNA downstream 37554 3947375 ~ 3950335 (-) True G488579
TU560763 lncRNA upstream 598 3989445 ~ 3990029 (-) True G488773
TU560764 lncRNA upstream 1425 3990272 ~ 3991358 (-) True G488774
TU560765 lncRNA upstream 2563 3991410 ~ 3992648 (-) True G488775
TU560766 lncRNA upstream 7544 3996391 ~ 3996699 (-) True G488776
TU560767 lncRNA upstream 10601 3999448 ~ 3999712 (-) True G488777
CI01000340_03750211_03772917.mRNA mRNA downstream 213973 3749935 ~ 3773916 (-) True CI01000340_03750211_03772917
CI01000340_03713291_03747080.mRNA mRNA downstream 240617 3712753 ~ 3747272 (-) True CI01000340_03713291_03747080
CI01000340_03670820_03675367.mRNA mRNA downstream 312522 3670713 ~ 3675367 (-) True CI01000340_03670820_03675367
CI01000340_03622734_03659141.mRNA mRNA downstream 328733 3621970 ~ 3659156 (-) True CI01000340_03622734_03659141
CI01000340_03607549_03614126.mRNA mRNA downstream 373763 3607130 ~ 3614126 (-) True CI01000340_03607549_03614126
CI01000340_04086574_04090310.mRNA mRNA upstream 97383 4086230 ~ 4090310 (-) True CI01000340_04086574_04090310
CI01000340_04277249_04284722.mRNA mRNA upstream 288292 4277139 ~ 4285407 (-) True CI01000340_04277249_04284722
CI01000340_04362537_04371224.mRNA mRNA upstream 373528 4362375 ~ 4371224 (-) True CI01000340_04362537_04371224
CI01000340_04381260_04383972.mRNA mRNA upstream 392237 4381084 ~ 4383972 (-) True CI01000340_04381260_04383972
CI01000340_04384950_04386594.mRNA mRNA upstream 395963 4384810 ~ 4386594 (-) True CI01000340_04384950_04386594
TU559770 other downstream 2085617 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3196480 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 3662173 325334 ~ 325716 (-) False G485786
TU557450 other downstream 3662226 325334 ~ 325663 (-) True G485786
TU557403 other downstream 3905794 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 16958 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 518349 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 611373 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 1331906 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2194443 6183290 ~ 6220642 (-) True G489516

Expression Profile