RNA id: TCONS_00022103


Basic Information

Item Value
RNA id TCONS_00022103
length 3590
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_010428
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6648030 ~ 6651719 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccccttcaagtaaagtcttatcaaaactttatttttaatttttttataagtaTTTCTGAGTTTTGAGTGTGCTTTGTGATATTAATCTGTATTAATACTAAACCAACACCATACCTTCAGATTTCCCTTTGTGGTGAAGGCTCTGCCACAGATGGAGCAGCCGAATGGTTTCTCGCCTGTATGAGTGCGCTCATGGATCTGAAGAGCACTGGCTGATGAAAAATTCTTCCCACAGGAGTGGCAGTTGTGTTGTTTGGGGGTCCGCCGAGGTGGGGGCGGTGCCAGCATTGGAGTGATGTTGGAGCTTATTGTTGTCTGAGCGGTTGCAGTAGGTACCTGCGGACCAACTGGTAAGTGGGGCCCCTCACACAAGGCCGGCGGTTTACTGTGTCCATTCTCAAATTTCACTGTGCTTGATTCTGAGCTTATATTGCTGGGAGTGCTTAAACCTAAAAGAGGgaaaacatttcatttatttgattcGATTCATTTTGGTGATCACATCAAATCACAGTTTCTGTCATTTTTGatcttgtgttcaacataaaTTTATTTAAGAAATACTACCTCTGTCTCTTCCCAGGAACAGCAAACTGAAGGGATTCTCATCTTTGACAAATGACCTGGTGGGCTGTGTGGCAGTGAGATCTAATGCGCCCGTGTTTTCCGATCCAGGAGAATGGATGTCCAACTGTTCAGACTTCACCATTGCATGCGCCGAGGTTGAGGTCAAAGCCTCATCTTTGCTGCTGCTATTTGCCTGAGGAGACTTAGAGCGATGACTCTCGGACTGACTGTAGGTAGGCGATAAAGCCAGCATAGAGCCAGACGATTCAGACTGTGCTGGACTCCCTACACTGTGGTTCTCCAAATCTACTAGAGTGGAAGATAAGTCATTCTTGAGCATGTCTCCATTTACCCCATCAACTCCACTCCCGTTTTCTGTAGGCTTTACGCTGAAAGAGTGGGTAATGTTAACAGCTGGGTCACTAAGCTTCATCTCATTCTCAAAAGCACCAATGCTTGAGATAAGAGAAGTTGGGGGTGAAGTGCTAGGAGACATCTCTGAGTATAGATGGAGCTGTTTGTGCAGGTCCATGTTCTCGTCTTTTAGACCTGTTTCATCTTCCAGTGCTTGGTCCATCTCATCAATTAGCTCATCGTCGTAGTTGCTCATGGCATCTAAGCTCTTTTCATCAAAGGACAGATCTGCGTCTGTGTCCTGAAAAGTATCAGGCAGAGGTGTGTTAGGAATCTGTCCACCCATATGCATGCGAATGTGTTGCTGCAGAACTACGGCATTAGTAAACTTTTTCTGGCATATAGGACAAGAGTGCTGTACCCGGAGAGGGGGCTTTGATCTGTGAACCCCAAAGTGTGTCTTCAGGTTACCCTTGGTTGTGAAAGCACGGccacatattttacatttaaagggtCTTTCTCCTGTGTGGATGCGATAATGCATCTTCAGGGCACTCTGACAACTTAGGACACGATGGCAGATGACACACTGGTTGGGATCTGTCATCTTCTTGTCAATATTCTCCACCAGTTGCTGTAGTTTTGAGGTCTCTGATGTTTGCATAGAGTCCAGGAGGCCACCAAAAGGAAATTTGGGCTTGAATTGATTTGACGATATTTGTAGAGAGGGATGAGAGACTGCAGATGAAGAATTCACTGGATCTGTGAGCTGTGTTCTGGTGCTACATGTGGTTGTAACTATGGTTGTAGAGATCACTTGAGATATGGAAGTGGTTGATATGCTTGTTTCACCAGGCCTGGTGGTGGAGTTGGGTGGTAGATGAAGTGCTTCAGGTTTGAGAACTGGAGGGGTGTTACTTGCCAAATTAGGTTGTGGTGAACTGGAAATTTGTGCAATACTGGTCTCAGTAATTAGGTGATTAGGAGACAAAGATGTACACTCGCTTGATGGCGGCGATGGCCTTTGAGGTGACCTATTTAAAGGGGAAAAACTAGTTGAATCTCCATAGCTTTCTATAATGCTGGGTATAGTAGGAGGGAGTTGCAGTGCTACTGATGTTGGGATAGTGGGCAAAATAGGTTTACTGTCCAGCCATGTTGTAACAGGTTTTTCTGGGGGCAACGACATGCCGTAAGGTATACCTGAGCTTGTTGGAACATTGTCCAGATACTCGGGCACTGGATATGGGTTCATTTGGATATGCGGATACTTTTCTTTGTGTCTTTGAAAATGAACCTTCAAGTTGCCCTTGGTTGAGAAGCGATTACCACAAATGTTGCATTTGAAAGGCCTTTCGCCAGTATGGGAACGCAGGTGAATTTGCAGCGCACTGTCACTTCCAAACACCTTGGCACAAAATCTGCACTTGTGTTTAAAAAACGGATCTTCTGAGCTGGGTTTGGTGTCAAACACAGATACATTTGGAGGCTTTGCTTTGCGGTGCTTCATAAGGGCGGAGAGGGGATCAAGAGCATTGGTTGTTGCTGCAATACTGGCTAGAGGATTAGGGAAGATAACACTGTTGGATGAGCTGTGAGGTACAAGTGGAAGGCTGGAGGGGGATGTAAGCAATCTTCCATGAGTCAGCGTTAGAGGACTAGGTGTGTTTCTTGGAAGTGAAATACCACAATTTATTTCTCCCCCAGTTCCTGTGCTACTGCTAGTGCAGCTACTGCTGCTAATTGACACTGAGCATGGTGGCATTTGTGGGGAAACACCATTACTGGTTGTTGGGTATAAAGAATTTATTGCAATATTGCTTTTCATCCCAGAACTTGCTAGTTGGCCACCCGCCGGAGGAACACTGGTACAGGCTACATCCAGAGCTGAAGATACTGCCACTGAAGCCTGCACATTTAAACTGTTGTTCATATGAAGCTGATTTATAGGAGGTGTAATGAAGCCACGCAGATGAAGCTGCCCAGGCATTGCAGGTATGCTAGAGGATGAGGGTACTTGTAAGGCAGCATTTATGCTGTGGTCTACTTTATGACTGACAGCGGTCTGTGTGGGAGCCTGATTGTTTATTAGTGCCACCTGGCTCCGAATCTGCTCGATCAATTTAAGTTGACGCAGCTGTTGTTGCTGCAAGGCCATAAGTTGATCCAGAATCATTGGGATAGCCATAGTTGACACTTCACTAGCTAGTGCTCCCCGGGCACCCTGAGAGAACTGAGCCACAGCCACACGGGTCCCATGCAGTGTTTCCAGTGTGACATTAGTGCTGGGTATAGAGTATCCTGCCCCAGAAGACTGCTTGTGATCCTCAAGTGGAGTACAGCGCCCGATTCCAGCATCATCTCTGCTCCTTCATCACCTTCGGTGGGCATGTGGCTTACCTCTACTGCATCCTCGCTGTTTGCTGGATCGCTTACACAGCTGGGCACAGGTGATGGCTCAGGTAGGTAGTCCTGTGCCGGATCTGATGTCACTTCATTGTCACTGATAATTAACACGAGTGGATTCTTGGTACAGGTCTTCAGATGTTCACAGAAATCAGACCACTTAAAAAATTCCGCACAACACTTTTCACACACATGGGTCTCTTCGCTCCCGCTGCGGCTCTCATTTCCGCTGTCTGAATCATCCACTCCTTCACCTGAGACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022102 lncRNA downstream 12734 6625848 ~ 6635296 (-) False XLOC_010427
TCONS_00020488 lncRNA downstream 12734 6634106 ~ 6635296 (-) True XLOC_010427
TCONS_00022101 lncRNA downstream 13051 6620949 ~ 6634979 (-) False XLOC_010427
TCONS_00021783 lncRNA downstream 21864 6605385 ~ 6626166 (-) False XLOC_010427
TCONS_00020484 lncRNA downstream 56860 6588022 ~ 6591170 (-) False XLOC_010426
TCONS_00022104 lncRNA upstream 550376 7202095 ~ 7214679 (-) False XLOC_010432
TCONS_00022105 lncRNA upstream 856382 7508101 ~ 7621115 (-) False XLOC_010436
TCONS_00022106 lncRNA upstream 899552 7551271 ~ 7554300 (-) False XLOC_010436
TCONS_00022107 lncRNA upstream 899552 7551271 ~ 7579989 (-) False XLOC_010436
TCONS_00022108 lncRNA upstream 899552 7551271 ~ 7595139 (-) False XLOC_010436
TCONS_00020478 mRNA downstream 223212 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA downstream 223214 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020477 mRNA downstream 256755 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020476 mRNA downstream 270358 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020474 mRNA downstream 442240 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020489 mRNA upstream 151751 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 151826 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020491 mRNA upstream 168729 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020492 mRNA upstream 168729 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020494 mRNA upstream 285467 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020473 other downstream 777341 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 790049 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1540613 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1586401 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1928645 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 176833 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 568273 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1042162 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1043075 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1636052 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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