RNA id: TU560780


Basic Information

Item Value
RNA id TU560780
length 524
lncRNA type intronic
GC content 0.35
exon number 1
gene id G488790
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4020218 ~ 4020741 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGTGTTACCATTTACATCTACATGGTTATTAAATTTACACTAAACCCAAAGCCCAGAGTTAGGGAAGACTATAACCTTCTTAATAATCTGGATTAAGTCAGATTTACTGTTCCGTATACTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATTTATTTATTCAGCAAGGACGTATAGAGCATTTGGATGTTTGCAAACAGCGATAATGTGTTTTGTATATCTGCAATATCCCGCAATTTTGACTTTTTTTCTCATAATTGTGATTGTGAATTGTACACTATATTGCCAAAAGTTTTGGGACGCCTGCCTTTACGTGCACATGAACTTTAATGACATCCCATTCTTAATCCGTAGAGTTTAATATGGAGTTGGCCCACCCTTTGCAGCTATAACAGCTTCAACTCTTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGTCATTTTTGACCATTCTTATAGAAGTGCATTTGTGAGGTCAGGCACTGATGTTGGACTGATGTTGTGAGCCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560779 lncRNA downstream 7 4019866 ~ 4020211 (-) True G488789
TU560778 lncRNA downstream 4030 4015875 ~ 4016188 (-) True G488788
TU560777 lncRNA downstream 4466 4015537 ~ 4015752 (-) True G488787
TU560776 lncRNA downstream 6745 4012759 ~ 4013473 (-) True G488786
TU560775 lncRNA downstream 9715 4010198 ~ 4010503 (-) True G488785
TU560781 lncRNA upstream 124 4020865 ~ 4021256 (-) True G488791
TU560782 lncRNA upstream 5111 4025852 ~ 4026054 (-) True G488792
TU560783 lncRNA upstream 6410 4027151 ~ 4027422 (-) True G488793
TU560565 lncRNA upstream 9405 4030146 ~ 4033228 (-) True G488586
TU560784 lncRNA upstream 12816 4033557 ~ 4033864 (-) True G488794
CI01000340_03750211_03772917.mRNA mRNA downstream 246302 3749935 ~ 3773916 (-) True CI01000340_03750211_03772917
CI01000340_03713291_03747080.mRNA mRNA downstream 272946 3712753 ~ 3747272 (-) True CI01000340_03713291_03747080
CI01000340_03670820_03675367.mRNA mRNA downstream 344851 3670713 ~ 3675367 (-) True CI01000340_03670820_03675367
CI01000340_03622734_03659141.mRNA mRNA downstream 361062 3621970 ~ 3659156 (-) True CI01000340_03622734_03659141
CI01000340_03607549_03614126.mRNA mRNA downstream 406092 3607130 ~ 3614126 (-) True CI01000340_03607549_03614126
CI01000340_04086574_04090310.mRNA mRNA upstream 65489 4086230 ~ 4090310 (-) True CI01000340_04086574_04090310
CI01000340_04277249_04284722.mRNA mRNA upstream 256398 4277139 ~ 4285407 (-) True CI01000340_04277249_04284722
CI01000340_04362537_04371224.mRNA mRNA upstream 341634 4362375 ~ 4371224 (-) True CI01000340_04362537_04371224
CI01000340_04381260_04383972.mRNA mRNA upstream 360343 4381084 ~ 4383972 (-) True CI01000340_04381260_04383972
CI01000340_04384950_04386594.mRNA mRNA upstream 364069 4384810 ~ 4386594 (-) True CI01000340_04384950_04386594
TU560772 other downstream 13770 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 2117946 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3228809 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 3694502 325334 ~ 325716 (-) False G485786
TU560860 other upstream 486455 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 579479 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 1300012 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2162549 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 2299716 6320457 ~ 6327372 (-) True G489511

Expression Profile