Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU559012 |
| length | 586 |
| lncRNA type | intronic |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G487200 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 4022568 ~ 4023153 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU559010 | lncRNA | upstream | 52475 | 3969769 ~ 3970093 (+) | True | G487198 |
| TU559009 | lncRNA | upstream | 53658 | 3968668 ~ 3968910 (+) | True | G487197 |
| TU558936 | lncRNA | upstream | 54142 | 3958255 ~ 3968426 (+) | True | G487134 |
| TU558930 | lncRNA | upstream | 72248 | 3947428 ~ 3950320 (+) | True | G487128 |
| TU559007 | lncRNA | upstream | 98281 | 3923855 ~ 3924287 (+) | True | G487196 |
| TU559013 | lncRNA | downstream | 3443 | 4026596 ~ 4026846 (+) | True | G487201 |
| TU559014 | lncRNA | downstream | 4969 | 4028122 ~ 4028366 (+) | True | G487202 |
| TU559015 | lncRNA | downstream | 5223 | 4028376 ~ 4028667 (+) | True | G487203 |
| TU559074 | lncRNA | downstream | 324215 | 4347368 ~ 4347575 (+) | True | G487253 |
| TU559076 | lncRNA | downstream | 327667 | 4350820 ~ 4351036 (+) | True | G487255 |
| CI01000340_03908893_03911941.mRNA | mRNA | upstream | 110042 | 3908760 ~ 3912526 (+) | True | CI01000340_03908893_03911941 |
| CI01000340_03853070_03866459.mRNA | mRNA | upstream | 155753 | 3853008 ~ 3866815 (+) | True | CI01000340_03853070_03866459 |
| CI01000340_03679908_03709888.mRNA | mRNA | upstream | 312519 | 3679824 ~ 3710049 (+) | True | CI01000340_03679908_03709888 |
| CI01000340_03662829_03666784.mRNA | mRNA | upstream | 355784 | 3662760 ~ 3666784 (+) | True | CI01000340_03662829_03666784 |
| CI01000340_03616496_03620617.mRNA | mRNA | upstream | 401598 | 3616496 ~ 3620970 (+) | True | CI01000340_03616496_03620617 |
| CI01000340_04060349_04070533.mRNA | mRNA | downstream | 37149 | 4060302 ~ 4071410 (+) | True | CI01000340_04060349_04070533 |
| CI01000340_04074777_04081250.mRNA | mRNA | downstream | 50895 | 4074048 ~ 4081469 (+) | True | CI01000340_04074777_04081250 |
| CI01000340_04249473_04264824.mRNA | mRNA | downstream | 226320 | 4249473 ~ 4266007 (+) | True | CI01000340_04249473_04264824 |
| CI01000340_04273797_04274531.mRNA | mRNA | downstream | 250444 | 4273597 ~ 4274533 (+) | True | CI01000340_04273797_04274531 |
| CI01000340_04310811_04341754.mRNA | mRNA | downstream | 287658 | 4310811 ~ 4341754 (+) | True | CI01000340_04310811_04341754 |
| TU558935 | other | upstream | 40023 | 3973915 ~ 3982545 (+) | True | G487133 |
| TU558577 | other | upstream | 1090768 | 2930091 ~ 2931800 (+) | True | G486806 |
| TU557142 | other | upstream | 3709323 | 311792 ~ 312038 (+) | True | G485516 |
| TU557027 | other | upstream | 3854934 | 163286 ~ 167634 (+) | True | G485427 |
| TU556971 | other | upstream | 3908799 | 106885 ~ 113769 (+) | True | G485373 |
| TU559057 | other | downstream | 376266 | 4399419 ~ 4401496 (+) | True | CI01000340_04399692_04401164 |
| TU559265 | other | downstream | 641156 | 4664309 ~ 4665185 (+) | True | CI01000340_04660938_04668996 |
| TU561697 | other | downstream | 2671068 | 6694221 ~ 6700788 (+) | False | G489634 |
| TU562819 | other | downstream | 5015659 | 9038812 ~ 9043101 (+) | True | G490645 |
| TU563018 | other | downstream | 5102031 | 9125184 ~ 9131397 (+) | True | G490826 |
