RNA id: TU560784


Basic Information

Item Value
RNA id TU560784
length 308
lncRNA type intronic
GC content 0.43
exon number 1
gene id G488794
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4033557 ~ 4033864 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCCAAAGTTGCTTATAATAATAAGACATGCCAACACTGAAGCATTACTTGATCGCACCTTCCTATATGATCGGAAATATCACACTGCTTTCATTGACTGTGCGGTCCGATTAAAAGTACAAAGCATTTTATTCAGTTGAGGTAAGTGAAATGGGTAAATTTCTCTAATTCTGTAAATAACTGGAGGGCATGTCACTGAAGCGGGAATTGCGCTTAGCCCAGCTGTGTGTGTGTCAGACACTGATGTCTTTAAGCTCCAGCACAGATCCTCAGAGCCGTTAAATCCCTCTGATCAAAGCAGTCAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560565 lncRNA downstream 329 4030146 ~ 4033228 (-) True G488586
TU560783 lncRNA downstream 6135 4027151 ~ 4027422 (-) True G488793
TU560782 lncRNA downstream 7503 4025852 ~ 4026054 (-) True G488792
TU560781 lncRNA downstream 12301 4020865 ~ 4021256 (-) True G488791
TU560780 lncRNA downstream 12816 4020218 ~ 4020741 (-) True G488790
TU560785 lncRNA upstream 282 4034146 ~ 4034379 (-) True G488795
TU560787 lncRNA upstream 39254 4073118 ~ 4073455 (-) True G488797
TU560552 lncRNA upstream 91499 4125363 ~ 4158522 (-) True G488573
TU560823 lncRNA upstream 233792 4267656 ~ 4267872 (-) True G488826
TU560826 lncRNA upstream 236354 4270218 ~ 4270487 (-) True G488829
CI01000340_03750211_03772917.mRNA mRNA downstream 259641 3749935 ~ 3773916 (-) True CI01000340_03750211_03772917
CI01000340_03713291_03747080.mRNA mRNA downstream 286285 3712753 ~ 3747272 (-) True CI01000340_03713291_03747080
CI01000340_03670820_03675367.mRNA mRNA downstream 358190 3670713 ~ 3675367 (-) True CI01000340_03670820_03675367
CI01000340_03622734_03659141.mRNA mRNA downstream 374401 3621970 ~ 3659156 (-) True CI01000340_03622734_03659141
CI01000340_03607549_03614126.mRNA mRNA downstream 419431 3607130 ~ 3614126 (-) True CI01000340_03607549_03614126
CI01000340_04086574_04090310.mRNA mRNA upstream 52366 4086230 ~ 4090310 (-) True CI01000340_04086574_04090310
CI01000340_04277249_04284722.mRNA mRNA upstream 243275 4277139 ~ 4285407 (-) True CI01000340_04277249_04284722
CI01000340_04362537_04371224.mRNA mRNA upstream 328511 4362375 ~ 4371224 (-) True CI01000340_04362537_04371224
CI01000340_04381260_04383972.mRNA mRNA upstream 347220 4381084 ~ 4383972 (-) True CI01000340_04381260_04383972
CI01000340_04384950_04386594.mRNA mRNA upstream 350946 4384810 ~ 4386594 (-) True CI01000340_04384950_04386594
TU560772 other downstream 27109 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 2131285 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3242148 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 3707841 325334 ~ 325716 (-) False G485786
TU560860 other upstream 473332 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 566356 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 1286889 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2149426 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 2286593 6320457 ~ 6327372 (-) True G489511

Expression Profile