RNA id: TU560953


Basic Information

Item Value
RNA id TU560953
length 480
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G488954
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4727686 ~ 4728165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACTCTGTGCGTTCGCTCGGCGGCTGCTATTGCACACTGCAGTTTAGATCAATTTTAGAATATCATAATAATAAATGCTGGGTGGCTTGTGTTGGTAAATGGCATGCCATTAATTTTAAAACTTATTGTATGATGGAGAAAATGCTGTATTACTTAGCTACTTGACAAAATAGTGTTTTTCTCTGAGGCATGGTAAAAGCATGGTACTCTCTGAAAATCAAGAAAACTAGATTTAAACAATAAGACTAAACGTGTTGAGCTATATAACAATAATTCGTTTTCTGTCTATAAATGTAACCAAACAGTCATTCCCTAGTCAATAAAACATGTAATATATTAATGCATCTTTGGTGTTTCCATGGTTTCTACAAAACAAAACCGGAAACCGAGGGTAACGCGGATATGACGCCATTGACAGGCGACTCCCGGACACGTCCCGTATCCTTGGTTAAAAATCGCGATTTTCTCACGATTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560950 lncRNA downstream 4572 4722848 ~ 4723114 (-) True G488951
TU560949 lncRNA downstream 5631 4721841 ~ 4722055 (-) True G488950
TU560947 lncRNA downstream 9845 4717580 ~ 4717841 (-) True G488948
TU560886 lncRNA downstream 34054 4688014 ~ 4693632 (-) True G488888
TU560826 lncRNA downstream 457199 4270218 ~ 4270487 (-) True G488829
TU560874 lncRNA upstream 70158 4798323 ~ 4798590 (-) True G488876
TU560847 lncRNA upstream 70632 4798797 ~ 4800530 (-) True G488849
TU560965 lncRNA upstream 266723 4994888 ~ 5003749 (-) True G488965
TU560971 lncRNA upstream 280488 5008653 ~ 5008993 (-) True G488971
TU560851 lncRNA upstream 362070 5090235 ~ 5132749 (-) True G488853
CI01000340_04685622_04711254.mRNA mRNA downstream 16432 4685450 ~ 4711254 (-) True CI01000340_04685622_04711254
CI01000340_04598932_04627160.mRNA mRNA downstream 100239 4598714 ~ 4627447 (-) False CI01000340_04598932_04627160
CI01000340_04586637_04588967.mRNA mRNA downstream 138323 4586379 ~ 4589363 (-) False CI01000340_04586637_04588967
CI01000340_04491232_04534682.mRNA mRNA downstream 193004 4490608 ~ 4534682 (-) False CI01000340_04491232_04534682
CI01000340_04403305_04410695.mRNA mRNA downstream 316991 4403156 ~ 4410695 (-) True CI01000340_04403305_04410695
CI01000340_04748822_04770480.mRNA mRNA upstream 20116 4748281 ~ 4770480 (-) True CI01000340_04748822_04770480
CI01000340_04787190_04796424.mRNA mRNA upstream 58773 4786938 ~ 4796424 (-) True CI01000340_04787190_04796424
CI01000340_04840574_04911814.mRNA mRNA upstream 111138 4839303 ~ 4914305 (-) True CI01000340_04840574_04911814
CI01000340_04918923_04993041.mRNA mRNA upstream 190449 4918614 ~ 4993274 (-) True CI01000340_04918923_04993041
CI01000340_05011408_05036816.mRNA mRNA upstream 283118 5011283 ~ 5036816 (-) True CI01000340_05011408_05036816
TU560885 other downstream 68625 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 131425 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 721238 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 2825414 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 3936277 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU561021 other upstream 592588 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 1455125 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 1592292 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 4071036 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 5293727 10021892 ~ 10027983 (-) True G491883

Expression Profile