RNA id: TU559278


Basic Information

Item Value
RNA id TU559278
length 316
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G487447
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4727704 ~ 4728019 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCGATTTTTAACCAAGGATACGGGACGTGTCCGGGAGTCGCCTGTCAATGGCGTCATATCCGCGTTACCCTCGGTTTCCGGTTTTGTTTTGTAGAAACCATGGAAACACCAAAGATGCATTAATATATTACATGTTTTATTGACTAGGGAATGACTGTTTGGTTACATTTATAGACAGAAAACGAATTATTGTTATATAGCTCAACACGTTTAGTCTTATTGTTTAAATCTAGTTTTCTTGATTTTCAGAGAGTACCATGCTTTTACCATGCCTCAGAGAAAAACACTATTTTGTCAAGTAGCTAAGTAATACAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559277 lncRNA upstream 368 4727105 ~ 4727336 (+) True G487446
TU559276 lncRNA upstream 5032 4722467 ~ 4722672 (+) True G487445
TU559275 lncRNA upstream 8188 4719262 ~ 4719516 (+) True G487444
TU559264 lncRNA upstream 64906 4662295 ~ 4662798 (+) False CI01000340_04660938_04668996
TU559177 lncRNA upstream 100674 4547919 ~ 4627030 (+) True G487347
TU559308 lncRNA downstream 52332 4780351 ~ 4789726 (+) True G487470
TU559228 lncRNA downstream 68792 4796811 ~ 4798223 (+) True G487397
TU559340 lncRNA downstream 171868 4899887 ~ 4900735 (+) True G487498
TU559347 lncRNA downstream 181205 4909224 ~ 4909874 (+) True G487505
TU559349 lncRNA downstream 184260 4912279 ~ 4912502 (+) True G487507
CI01000340_04660938_04668996.mRNA mRNA upstream 58382 4659584 ~ 4669322 (+) False CI01000340_04660938_04668996
CI01000340_04564752_04566790.mRNA mRNA upstream 160548 4564611 ~ 4567156 (+) True CI01000340_04564752_04566790
CI01000340_04399692_04401164.mRNA mRNA upstream 326244 4399552 ~ 4401460 (+) False CI01000340_04399692_04401164
CI01000340_04387653_04393950.mRNA mRNA upstream 333585 4387653 ~ 4394119 (+) True CI01000340_04387653_04393950
CI01000340_04374493_04379773.mRNA mRNA upstream 347219 4374316 ~ 4380485 (+) True CI01000340_04374493_04379773
CI01000340_04809014_04832590.mRNA mRNA downstream 80995 4809014 ~ 4832590 (+) True CI01000340_04809014_04832590
CI01000340_05105114_05112407.mRNA mRNA downstream 376340 5104359 ~ 5112713 (+) True CI01000340_05105114_05112407
CI01000340_05165855_05175759.mRNA mRNA downstream 437227 5165246 ~ 5176372 (+) True CI01000340_05165855_05175759
CI01000340_05338225_05385755.mRNA mRNA downstream 610206 5338225 ~ 5385755 (+) True CI01000340_05338225_05385755
CI01000340_05433329_05446428.mRNA mRNA downstream 705310 5433329 ~ 5446781 (+) True CI01000340_05433329_05446428
TU559265 other upstream 62519 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 326208 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 745159 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 1795904 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 4414459 311792 ~ 312038 (+) True G485516
TU561697 other downstream 1966202 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 4310793 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 4397165 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 4506954 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 5103454 9831473 ~ 9845052 (+) True G490896

Expression Profile