Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU560851 |
| length | 41909 |
| lncRNA type | antisense_over |
| GC content | 0.36 |
| exon number | 3 |
| gene id | G488853 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 5090235 ~ 5132749 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU560971 | lncRNA | downstream | 81242 | 5008653 ~ 5008993 (-) | True | G488971 |
| TU560965 | lncRNA | downstream | 86486 | 4994888 ~ 5003749 (-) | True | G488965 |
| TU560847 | lncRNA | downstream | 289705 | 4798797 ~ 4800530 (-) | True | G488849 |
| TU560874 | lncRNA | downstream | 291645 | 4798323 ~ 4798590 (-) | True | G488876 |
| TU560953 | lncRNA | downstream | 362070 | 4727686 ~ 4728165 (-) | True | G488954 |
| TU560876 | lncRNA | upstream | 18566 | 5151315 ~ 5152688 (-) | True | G488878 |
| TU561033 | lncRNA | upstream | 139311 | 5272060 ~ 5272285 (-) | True | G489030 |
| TU561035 | lncRNA | upstream | 150164 | 5282913 ~ 5283225 (-) | True | G489032 |
| TU561086 | lncRNA | upstream | 316128 | 5448877 ~ 5449105 (-) | True | G489083 |
| TU561115 | lncRNA | upstream | 385433 | 5518182 ~ 5519118 (-) | True | G489108 |
| CI01000340_05011408_05036816.mRNA | mRNA | downstream | 53419 | 5011283 ~ 5036816 (-) | True | CI01000340_05011408_05036816 |
| CI01000340_04918923_04993041.mRNA | mRNA | downstream | 96961 | 4918614 ~ 4993274 (-) | True | CI01000340_04918923_04993041 |
| CI01000340_04840574_04911814.mRNA | mRNA | downstream | 175930 | 4839303 ~ 4914305 (-) | True | CI01000340_04840574_04911814 |
| CI01000340_04787190_04796424.mRNA | mRNA | downstream | 293811 | 4786938 ~ 4796424 (-) | True | CI01000340_04787190_04796424 |
| CI01000340_04748822_04770480.mRNA | mRNA | downstream | 319755 | 4748281 ~ 4770480 (-) | True | CI01000340_04748822_04770480 |
| CI01000340_05142661_05150544.mRNA | mRNA | upstream | 9709 | 5142458 ~ 5150627 (-) | True | CI01000340_05142661_05150544 |
| CI01000340_05153622_05164991.mRNA | mRNA | upstream | 20810 | 5153559 ~ 5165049 (-) | True | CI01000340_05153622_05164991 |
| CI01000340_05177681_05192437.mRNA | mRNA | upstream | 44844 | 5177593 ~ 5192437 (-) | True | CI01000340_05177681_05192437 |
| CI01000340_05196551_05197666.mRNA | mRNA | upstream | 63379 | 5196128 ~ 5198285 (-) | True | CI01000340_05196551_05197666 |
| CI01000340_05321995_05329778.mRNA | mRNA | upstream | 188286 | 5321035 ~ 5330215 (-) | False | CI01000340_05321995_05329778 |
| TU560885 | other | downstream | 431174 | 4658632 ~ 4659061 (-) | True | G488887 |
| TU560860 | other | downstream | 493974 | 4507196 ~ 4518120 (-) | True | G488862 |
| TU560772 | other | downstream | 1083787 | 4005805 ~ 4006448 (-) | True | G488782 |
| TU559770 | other | downstream | 3187963 | 1895801 ~ 1902272 (-) | True | G487884 |
| TU557495 | other | downstream | 4298826 | 786551 ~ 791409 (-) | True | CI01000340_00787534_00791061 |
| TU561021 | other | upstream | 188004 | 5320753 ~ 5325144 (-) | True | CI01000340_05321995_05329778 |
| TU561569 | other | upstream | 1050541 | 6183290 ~ 6220642 (-) | True | G489516 |
| TU561564 | other | upstream | 1187708 | 6320457 ~ 6327372 (-) | True | G489511 |
| TU564040 | other | upstream | 3666452 | 8799201 ~ 8799577 (-) | True | G491712 |
| TU564232 | other | upstream | 4889143 | 10021892 ~ 10027983 (-) | True | G491883 |
