RNA id: TU559524


Basic Information

Item Value
RNA id TU559524
length 375
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G487658
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5224326 ~ 5224700 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAATCAGTGGTTCAGAGCTCCAAAATCACATTTCGGCACTTACGATTTCAGTAAACGAGGCTTCGTTACGTCATAAGTGTTTCGAAATTTCAATAGTTCAGGTGACTTTGGCAGTTTGATACACGCTCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGAAGTTTTTGAAATCGCTCATCACTAGATTGTTGAGGCATTATTTTGTTTTTTGTTTTTTTGGCGCAAAAAAAGTATTCTCATCGCTTTAAAATATTAAGGTTGAACCACTGTACTCACATGAACTGTTTTAAATATGTTTTTAGTACTTTTCTGGGCATTGAGAAAGGAAATGATCTTGCTGGCAATGCAGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559495 lncRNA upstream 71362 5152490 ~ 5152964 (+) True G487638
TU559447 lncRNA upstream 73710 5142443 ~ 5150616 (+) True G487602
TU559423 lncRNA upstream 134653 5089469 ~ 5089673 (+) True G487581
TU559422 lncRNA upstream 141047 5083013 ~ 5083279 (+) True G487580
TU559349 lncRNA upstream 311824 4912279 ~ 4912502 (+) True G487507
TU559584 lncRNA downstream 319096 5543796 ~ 5573983 (+) True G487709
TU559602 lncRNA downstream 363746 5588446 ~ 5606729 (+) True G487724
TU559655 lncRNA downstream 431314 5656014 ~ 5670162 (+) True G487775
TU559679 lncRNA downstream 514817 5739517 ~ 5748252 (+) True G487799
TU559689 lncRNA downstream 531684 5756384 ~ 5756606 (+) True G487808
CI01000340_05165855_05175759.mRNA mRNA upstream 47954 5165246 ~ 5176372 (+) True CI01000340_05165855_05175759
CI01000340_05105114_05112407.mRNA mRNA upstream 111613 5104359 ~ 5112713 (+) True CI01000340_05105114_05112407
CI01000340_04809014_04832590.mRNA mRNA upstream 391736 4809014 ~ 4832590 (+) True CI01000340_04809014_04832590
CI01000340_04660938_04668996.mRNA mRNA upstream 555004 4659584 ~ 4669322 (+) False CI01000340_04660938_04668996
CI01000340_04564752_04566790.mRNA mRNA upstream 657170 4564611 ~ 4567156 (+) True CI01000340_04564752_04566790
CI01000340_05338225_05385755.mRNA mRNA downstream 113525 5338225 ~ 5385755 (+) True CI01000340_05338225_05385755
CI01000340_05433329_05446428.mRNA mRNA downstream 208629 5433329 ~ 5446781 (+) True CI01000340_05433329_05446428
CI01000340_05646434_05651598.mRNA mRNA downstream 420937 5645637 ~ 5652345 (+) True CI01000340_05646434_05651598
CI01000340_05697468_05705929.mRNA mRNA downstream 472617 5697317 ~ 5706900 (+) True CI01000340_05697468_05705929
CI01000340_05781697_05792066.mRNA mRNA downstream 556152 5780852 ~ 5792678 (+) True CI01000340_05781697_05792066
TU559265 other upstream 559141 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 822830 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 1241781 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 2292526 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 4911081 311792 ~ 312038 (+) True G485516
TU561697 other downstream 1469521 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 3814112 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 3900484 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 4010273 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 4606773 9831473 ~ 9845052 (+) True G490896

Expression Profile