RNA id: TU561086



Basic Information


Item Value
RNA id TU561086
length 229
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G489083
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5448877 ~ 5449105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGACCTGAAAAATTTTCATCAGTCCTTAGAACAGCGCAAACTTCGCCAGTGCCAGAAGTGAACTGGCTCACACAGGTTGGACTCTTAAAATTCAGACACTGCAGCATTTCAACTGTTCCTTAAGAGAATTTAAATTATATACATAAAATGATATTTTGAAGGAACATATTAAGACTTCACATACACCATAGGACATACAAAATTAATGACTTAAACATTCCCATGATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU561035 lncRNA downstream 165652 5282913 ~ 5283225 (-) True G489032
TU561033 lncRNA downstream 176592 5272060 ~ 5272285 (-) True G489030
TU560876 lncRNA downstream 296189 5151315 ~ 5152688 (-) True G488878
TU560851 lncRNA downstream 316128 5090235 ~ 5132749 (-) True G488853
TU560971 lncRNA downstream 439884 5008653 ~ 5008993 (-) True G488971
TU561115 lncRNA upstream 69077 5518182 ~ 5519118 (-) True G489108
TU561174 lncRNA upstream 217413 5666518 ~ 5666834 (-) True G489159
TU561176 lncRNA upstream 221426 5670531 ~ 5670749 (-) True G489161
TU561177 lncRNA upstream 224420 5673525 ~ 5673873 (-) True G489162
TU561204 lncRNA upstream 307260 5756365 ~ 5756630 (-) True G489189
CI01000340_05387790_05394295.mRNA mRNA downstream 54432 5386989 ~ 5394445 (-) True CI01000340_05387790_05394295
CI01000340_05321995_05329778.mRNA mRNA downstream 118662 5321035 ~ 5330215 (-) False CI01000340_05321995_05329778
CI01000340_05196551_05197666.mRNA mRNA downstream 250592 5196128 ~ 5198285 (-) True CI01000340_05196551_05197666
CI01000340_05177681_05192437.mRNA mRNA downstream 256440 5177593 ~ 5192437 (-) True CI01000340_05177681_05192437
CI01000340_05153622_05164991.mRNA mRNA downstream 283828 5153559 ~ 5165049 (-) True CI01000340_05153622_05164991
CI01000340_05450963_05454017.mRNA mRNA upstream 1288 5450393 ~ 5455519 (-) True CI01000340_05450963_05454017
CI01000340_05562762_05566332.mRNA mRNA upstream 113511 5562616 ~ 5566332 (-) True CI01000340_05562762_05566332
CI01000340_05576979_05643605.mRNA mRNA upstream 127874 5576979 ~ 5643605 (-) True CI01000340_05576979_05643605
CI01000340_05717260_05723962.mRNA mRNA upstream 267098 5716203 ~ 5723962 (-) True CI01000340_05717260_05723962
CI01000340_05739446_05740109.mRNA mRNA upstream 289876 5738981 ~ 5742133 (-) True CI01000340_05739446_05740109
TU561021 other downstream 123733 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 789816 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 852616 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 1442429 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 3546605 1895801 ~ 1902272 (-) True G487884
TU561569 other upstream 734185 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 871352 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 3350096 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 4572787 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 4908079 10360197 ~ 10362404 (-) True G492045

Expression Profile