RNA id: TU559655


Basic Information

Item Value
RNA id TU559655
length 481
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G487775
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5656014 ~ 5670162 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATGGCCACTGTGTTGGTGTAATTGAGAGTGGTACACAGAAACAGGATCTTGCCTTTGTGCTATGTCAACAGCTTTGGAAAAAAAATCATGTATAGGAGGAAGGATGAGAAGGATTCTAACTAGAGATTACACCAGCTCCAGTTTGGATCCAGCCTCTTACGAAGACTTCAGATGACGAAACACCTGTGAAGAGATGACGCCAACCCCATGTGAGGACTTCAGATGACGCCAACTCCGAATCAACATGCACCACTGCCAAATTTTCTATATATTGTAATTGTAATCATTATGATCACAACTTGTAATAATTGTTTTAATGAGCTCATTTTTTTCTGCATAAATGATTACATGATGTTAGCTAACTACATGATTTGAATTATTTTAGAATTCTACATTTCTGACATATGGACATTACTTGGACACAGTCACCTCTGAATAACAGATTACTCTAAATGGTAGAAACGTGCATTTTTTGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559602 lncRNA upstream 49285 5588446 ~ 5606729 (+) True G487724
TU559584 lncRNA upstream 82031 5543796 ~ 5573983 (+) True G487709
TU559524 lncRNA upstream 431314 5224326 ~ 5224700 (+) True G487658
TU559495 lncRNA upstream 503050 5152490 ~ 5152964 (+) True G487638
TU559447 lncRNA upstream 505398 5142443 ~ 5150616 (+) True G487602
TU559679 lncRNA downstream 69355 5739517 ~ 5748252 (+) True G487799
TU559689 lncRNA downstream 86222 5756384 ~ 5756606 (+) True G487808
TU559693 lncRNA downstream 92418 5762580 ~ 5762813 (+) True G487812
TU559695 lncRNA downstream 94661 5764823 ~ 5770886 (+) True G487814
TU561264 lncRNA downstream 159152 5829314 ~ 5829540 (+) True G489237
CI01000340_05646434_05651598.mRNA mRNA upstream 3669 5645637 ~ 5652345 (+) True CI01000340_05646434_05651598
CI01000340_05433329_05446428.mRNA mRNA upstream 209233 5433329 ~ 5446781 (+) True CI01000340_05433329_05446428
CI01000340_05338225_05385755.mRNA mRNA upstream 270259 5338225 ~ 5385755 (+) True CI01000340_05338225_05385755
CI01000340_05165855_05175759.mRNA mRNA upstream 479642 5165246 ~ 5176372 (+) True CI01000340_05165855_05175759
CI01000340_05105114_05112407.mRNA mRNA upstream 543301 5104359 ~ 5112713 (+) True CI01000340_05105114_05112407
CI01000340_05697468_05705929.mRNA mRNA downstream 27155 5697317 ~ 5706900 (+) True CI01000340_05697468_05705929
CI01000340_05781697_05792066.mRNA mRNA downstream 110690 5780852 ~ 5792678 (+) True CI01000340_05781697_05792066
CI01000340_05875022_05877021.mRNA mRNA downstream 204425 5874587 ~ 5877298 (+) True CI01000340_05875022_05877021
CI01000340_05942559_05948192.mRNA mRNA downstream 271814 5941976 ~ 5949268 (+) True CI01000340_05942559_05948192
CI01000340_05967007_05972445.mRNA mRNA downstream 296554 5966716 ~ 5972589 (+) True CI01000340_05967007_05972445
TU559265 other upstream 990829 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 1254518 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 1673469 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 2724214 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 5342769 311792 ~ 312038 (+) True G485516
TU561697 other downstream 1024059 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 3368650 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 3455022 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 3564811 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 4161311 9831473 ~ 9845052 (+) True G490896

Expression Profile