RNA id: TU559695


Basic Information

Item Value
RNA id TU559695
length 206
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G487814
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5764823 ~ 5770886 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGCATATTAGACATTCATGAGAACGTGTGCCCATATAATCTTAGTGTAAGTGGTAAACAGATTTGGCTTGCTGTCTGCTATAGAGGGGCTCGGAGAGGATATTCTACTCGAGCTCCGATTGCCCCCCTATAACAGGCAAAATTGTACAAAAAGGAGGAGGAGGGATGCCAAAAGAACAACAAGAAGAGTAATGTCATTGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559693 lncRNA upstream 2010 5762580 ~ 5762813 (+) True G487812
TU559689 lncRNA upstream 8217 5756384 ~ 5756606 (+) True G487808
TU559679 lncRNA upstream 16571 5739517 ~ 5748252 (+) True G487799
TU559655 lncRNA upstream 94661 5656014 ~ 5670162 (+) True G487775
TU559602 lncRNA upstream 158094 5588446 ~ 5606729 (+) True G487724
TU561264 lncRNA downstream 58428 5829314 ~ 5829540 (+) True G489237
TU561262 lncRNA downstream 58897 5829783 ~ 5829993 (+) True G489235
TU561255 lncRNA downstream 115128 5886014 ~ 5906995 (+) True G489228
TU561257 lncRNA downstream 227041 5997927 ~ 6000707 (+) True G489230
TU561256 lncRNA downstream 230065 6000951 ~ 6010551 (+) True G489229
CI01000340_05697468_05705929.mRNA mRNA upstream 57923 5697317 ~ 5706900 (+) True CI01000340_05697468_05705929
CI01000340_05646434_05651598.mRNA mRNA upstream 112478 5645637 ~ 5652345 (+) True CI01000340_05646434_05651598
CI01000340_05433329_05446428.mRNA mRNA upstream 318042 5433329 ~ 5446781 (+) True CI01000340_05433329_05446428
CI01000340_05338225_05385755.mRNA mRNA upstream 379068 5338225 ~ 5385755 (+) True CI01000340_05338225_05385755
CI01000340_05165855_05175759.mRNA mRNA upstream 588451 5165246 ~ 5176372 (+) True CI01000340_05165855_05175759
CI01000340_05781697_05792066.mRNA mRNA downstream 9966 5780852 ~ 5792678 (+) True CI01000340_05781697_05792066
CI01000340_05875022_05877021.mRNA mRNA downstream 103701 5874587 ~ 5877298 (+) True CI01000340_05875022_05877021
CI01000340_05942559_05948192.mRNA mRNA downstream 171090 5941976 ~ 5949268 (+) True CI01000340_05942559_05948192
CI01000340_05967007_05972445.mRNA mRNA downstream 195830 5966716 ~ 5972589 (+) True CI01000340_05967007_05972445
CI01000340_06033435_06039832.mRNA mRNA downstream 261371 6032257 ~ 6039849 (+) True CI01000340_06033435_06039832
TU559265 other upstream 1099638 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 1363327 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 1782278 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 2833023 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 5451578 311792 ~ 312038 (+) True G485516
TU561697 other downstream 923335 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 3267926 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 3354298 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 3464087 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 4060587 9831473 ~ 9845052 (+) True G490896

Expression Profile