RNA id: TU561216


Basic Information

Item Value
RNA id TU561216
length 376
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G489195
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5781152 ~ 5781883 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGATTGTATGATGGAGCTTACCACAATATAATAAAATTATAATAAAATTATCCCATGTTCTGACCTGGCAGATTCGTCGTACTGCTCTTTTGTTGGTGAGTCTGTATTTCCAGGTGAGGTAGAGGCTGCGCTGCTGGCGAGGGATGAAGGGTTTGGCTCTTGGATTGGGTGTCCAGGTGTCCATACCTGCAGTCCTGCCCACTGCTCCTGATCACAACACCAGCCTGCATTCGACAACGCCTGCGATCATGTCTTCTTCATCTCAGCAGCATGTTATGTTGAACGGAAACGACGTCCTGCCTCTCCTGAAAATATAGCTGTAATTTAGTTTATGTCGGGTCTAATAATGTTTGGCCATATGCAGGTAATGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561204 lncRNA downstream 24522 5756365 ~ 5756630 (-) True G489189
TU561177 lncRNA downstream 107279 5673525 ~ 5673873 (-) True G489162
TU561176 lncRNA downstream 110403 5670531 ~ 5670749 (-) True G489161
TU561174 lncRNA downstream 114318 5666518 ~ 5666834 (-) True G489159
TU561115 lncRNA downstream 262034 5518182 ~ 5519118 (-) True G489108
TU561220 lncRNA upstream 11902 5793785 ~ 5793997 (-) True G489199
TU561490 lncRNA upstream 72431 5854314 ~ 5854546 (-) True G489458
TU561496 lncRNA upstream 92118 5874001 ~ 5875300 (-) True G489463
TU561506 lncRNA upstream 101508 5883391 ~ 5885424 (-) True G489472
TU561534 lncRNA upstream 126532 5908415 ~ 5910422 (-) True G489486
CI01000340_05778950_05780358.mRNA mRNA downstream 723 5778861 ~ 5780429 (-) True CI01000340_05778950_05780358
CI01000340_05739446_05740109.mRNA mRNA downstream 39019 5738981 ~ 5742133 (-) True CI01000340_05739446_05740109
CI01000340_05717260_05723962.mRNA mRNA downstream 57190 5716203 ~ 5723962 (-) True CI01000340_05717260_05723962
CI01000340_05576979_05643605.mRNA mRNA downstream 137547 5576979 ~ 5643605 (-) True CI01000340_05576979_05643605
CI01000340_05562762_05566332.mRNA mRNA downstream 214820 5562616 ~ 5566332 (-) True CI01000340_05562762_05566332
CI01000340_05796381_05802803.mRNA mRNA upstream 14498 5796381 ~ 5802803 (-) True CI01000340_05796381_05802803
CI01000340_06068195_06072250.mRNA mRNA upstream 285174 6067057 ~ 6072288 (-) True CI01000340_06068195_06072250
CI01000340_06095704_06194498.mRNA mRNA upstream 313821 6095704 ~ 6194498 (-) False CI01000340_06095704_06194498
CI01000340_06222356_06224576.mRNA mRNA upstream 440161 6222044 ~ 6224576 (-) True CI01000340_06222356_06224576
CI01000340_06248419_06255089.mRNA mRNA upstream 465517 6247400 ~ 6255165 (-) True CI01000340_06248419_06255089
TU561021 other downstream 456008 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 1122091 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 1184891 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 1774704 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 3878880 1895801 ~ 1902272 (-) True G487884
TU561569 other upstream 401407 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 538574 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 3017318 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 4240009 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 4575301 10360197 ~ 10362404 (-) True G492045

Expression Profile