RNA id: TU561496


Basic Information

Item Value
RNA id TU561496
length 981
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G489463
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5874001 ~ 5875300 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGTACAGGTCTCGGCCAGGGCTTCCCTGAAGTAAGGCTCGTCCTCATGACCCCAACATACTCCACAAAGGTGCCAGGGAAGTTGCCCTTCTCCTTAGTGCGTTCATTGGTGCCATGCAGCCAGCCCTTTGGGCACTTCTCGTCACCCTCCTGGTAATCAGACGTCAGCAGTGCCATCTTACTGACCGTGAGGAGATCGCCAGGCTGCAGGGAGATATCGTCACCCCTCTCCTGTTTGTACTCGAACAGTGCACGGTACTGGAAGCTGTCAGAGCTCATGATTTGTTATTTACATGAGCTCAGAGGGTTTTCTGTGTTTGATGTTTATTTAAAAATGACCTGGATGTAAGTTCGTCGTTTGAATCCTGAGTGCTAACTCACTTGGAAAGTCCTTGGGTTAAATCCTGAGAGCTCAGTGACATTAGTTTCTTGTAAGGGTTAAAACTCCAACAGTACCATATGTAGGGCAGAGGCCGTTATTGCGCAGTTCTAGATTTGGTCCATTAATAAAAAGTACAAATTTACTTGAAACGAATTCTAGCAGTCTGTGGTAAGATATAAAACGGAGTCAGAGAAAGCAAAAACAGCCCCATGAAGCGAGGGATGAACAGGCGGTTGATGGTGCAGGACAGTGATAGCACAAATTTGGGGACACAGTGACCTGAAATCGGGACGTTGGGCTTTTCTGCAGCATTGGCACTAGTCCACATATAGAAATGAAACATTTATTGAAGTAACCTCTCAGTCCATTAGCAGGTGTGGTCAGAAAGATACTAGCATGGACATTGCCAGTCTATTTATCAAATGACTGAGCAAGAGCCTTGGTCATCTTCTTGTTAAAGACCTTAAAACCTACTGCCGCACTTCCCCAGACTGCCCGAAATACAAGATGCACGTAGTCCAACATAAGAGGAACGAACGAACATTTATAGTCTGTTTAGTTAAAACATGCGTTTAAAATATATTCCCAAACAACCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561490 lncRNA downstream 19455 5854314 ~ 5854546 (-) True G489458
TU561220 lncRNA downstream 80004 5793785 ~ 5793997 (-) True G489199
TU561216 lncRNA downstream 92118 5781152 ~ 5781883 (-) True G489195
TU561204 lncRNA downstream 117371 5756365 ~ 5756630 (-) True G489189
TU561177 lncRNA downstream 200128 5673525 ~ 5673873 (-) True G489162
TU561506 lncRNA upstream 8091 5883391 ~ 5885424 (-) True G489472
TU561534 lncRNA upstream 33115 5908415 ~ 5910422 (-) True G489486
TU561494 lncRNA upstream 67157 5942457 ~ 5944002 (-) True G489461
TU561576 lncRNA upstream 273445 6148745 ~ 6167032 (-) True G489523
TU561674 lncRNA upstream 540812 6416112 ~ 6416471 (-) True G489618
CI01000340_05796381_05802803.mRNA mRNA downstream 71198 5796381 ~ 5802803 (-) True CI01000340_05796381_05802803
CI01000340_05778950_05780358.mRNA mRNA downstream 93572 5778861 ~ 5780429 (-) True CI01000340_05778950_05780358
CI01000340_05739446_05740109.mRNA mRNA downstream 131868 5738981 ~ 5742133 (-) True CI01000340_05739446_05740109
CI01000340_05717260_05723962.mRNA mRNA downstream 150039 5716203 ~ 5723962 (-) True CI01000340_05717260_05723962
CI01000340_05576979_05643605.mRNA mRNA downstream 230396 5576979 ~ 5643605 (-) True CI01000340_05576979_05643605
CI01000340_06068195_06072250.mRNA mRNA upstream 191757 6067057 ~ 6072288 (-) True CI01000340_06068195_06072250
CI01000340_06095704_06194498.mRNA mRNA upstream 220404 6095704 ~ 6194498 (-) False CI01000340_06095704_06194498
CI01000340_06222356_06224576.mRNA mRNA upstream 346744 6222044 ~ 6224576 (-) True CI01000340_06222356_06224576
CI01000340_06248419_06255089.mRNA mRNA upstream 372100 6247400 ~ 6255165 (-) True CI01000340_06248419_06255089
CI01000340_06256040_06258336.mRNA mRNA upstream 380664 6255964 ~ 6258336 (-) True CI01000340_06256040_06258336
TU561021 other downstream 548857 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 1214940 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 1277740 4507196 ~ 4518120 (-) True G488862
TU560772 other downstream 1867553 4005805 ~ 4006448 (-) True G488782
TU559770 other downstream 3971729 1895801 ~ 1902272 (-) True G487884
TU561569 other upstream 307990 6183290 ~ 6220642 (-) True G489516
TU561564 other upstream 445157 6320457 ~ 6327372 (-) True G489511
TU564040 other upstream 2923901 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 4146592 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 4481884 10360197 ~ 10362404 (-) True G492045

Expression Profile