RNA id: TU561298


Basic Information

Item Value
RNA id TU561298
length 203
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G489271
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6073741 ~ 6073943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAACCCTATGCTGACAAGTACACAGACTGCCTTATAGATGAGCGTTCTGTCCTCAGCTGACCAGACTGTAGGAGCTTACTAATGCGCTAACGTATAGCTAAAGCCTCTCACACGGCGACCTGTCCTCAAGCTAAAGACCTCCCCTTGATGACTATCTAATGTTCCCTCATAAAAGCAGAAGGAAATTACATTGGGAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561256 lncRNA upstream 63190 6000951 ~ 6010551 (+) True G489229
TU561257 lncRNA upstream 73034 5997927 ~ 6000707 (+) True G489230
TU561255 lncRNA upstream 166746 5886014 ~ 5906995 (+) True G489228
TU561262 lncRNA upstream 243748 5829783 ~ 5829993 (+) True G489235
TU561264 lncRNA upstream 244201 5829314 ~ 5829540 (+) True G489237
TU561301 lncRNA downstream 3068 6077011 ~ 6077243 (+) True G489274
TU561308 lncRNA downstream 12743 6086686 ~ 6087057 (+) True G489281
TU561281 lncRNA downstream 24031 6097974 ~ 6098288 (+) True G489254
TU561359 lncRNA downstream 96494 6170437 ~ 6170693 (+) True G489329
TU561360 lncRNA downstream 96789 6170732 ~ 6170962 (+) True G489330
CI01000340_06033435_06039832.mRNA mRNA upstream 33892 6032257 ~ 6039849 (+) True CI01000340_06033435_06039832
CI01000340_05967007_05972445.mRNA mRNA upstream 101152 5966716 ~ 5972589 (+) True CI01000340_05967007_05972445
CI01000340_05942559_05948192.mRNA mRNA upstream 124473 5941976 ~ 5949268 (+) True CI01000340_05942559_05948192
CI01000340_05875022_05877021.mRNA mRNA upstream 196443 5874587 ~ 5877298 (+) True CI01000340_05875022_05877021
CI01000340_05781697_05792066.mRNA mRNA upstream 281063 5780852 ~ 5792678 (+) True CI01000340_05781697_05792066
CI01000340_06227847_06235507.mRNA mRNA downstream 153904 6227847 ~ 6235903 (+) True CI01000340_06227847_06235507
CI01000340_06237715_06245533.mRNA mRNA downstream 163772 6237715 ~ 6245762 (+) True CI01000340_06237715_06245533
CI01000340_06264637_06276320.mRNA mRNA downstream 190694 6264637 ~ 6276803 (+) True CI01000340_06264637_06276320
CI01000340_06326491_06326891.mRNA mRNA downstream 252548 6326491 ~ 6327145 (+) True CI01000340_06326491_06326891
CI01000340_06327907_06340628.mRNA mRNA downstream 253543 6327486 ~ 6340644 (+) True CI01000340_06327907_06340628
TU559265 other upstream 1408556 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 1672245 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 2091196 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 3141941 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 5760496 311792 ~ 312038 (+) True G485516
TU561697 other downstream 620278 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 2964869 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 3051241 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 3161030 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 3757530 9831473 ~ 9845052 (+) True G490896

Expression Profile