RNA id: TCONS_00020496


Basic Information

Item Value
RNA id TCONS_00020496
length 4285
RNA type mRNA
GC content 0.39
exon number 8
gene id XLOC_010432
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7202082 ~ 7239508 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCAGAGTTCGAGAAAAACACCGTTCACATCAGAGACCCTGAGAGGGTGGAGCAGATTATCTGTGGTCTCATTAAAGGTGGAGCTTCCAAACTGCAGaTCATCACAGATTTCGATATGACGTTAAGCAGATTTGCCGTCAATGGAAAACGTTGTCCATCATGTCATAATATCATTGACAACTCAAAACTGGTGACAGACGATTGTAGGAAGAAGctggtcCACCTAAAGGAAACGTATTATCCCATAGAGATAGACCCTCATCTGACAATGGAGGAGAAATATCCATTTATGGTGGAGTGgtATTTTAAGTCTCACACATTATTGGTTGAACAGAGATTGGAAAAAGACAAACTTCCAGAGGCCGTCAGAGAGTCGGACGTCAGTCTAAAGGAAGGTTACGAGCAGTTCTTTGACCGGCTGCATCAGCACAGCGTTCCCGTGTTCATCTTTTCGGCGGGTCTGGGGGATGTGCTGGAGGAGATCATCAGACAAGCTGGCGTCTACCACCCCAACGTCAAAGTTGTGTCCAACTTCATGGACTTTGATGACAATGGGGTTCTGAAAGGCTTTAAAGGAGAGCTGATCCATGTTTACAACAAGCATGACGGTGCTTTGAGGAACACGGAGTACTTCAAACAGCTGAAGGACAATGGAAACATTATTCTGCTAGGAGACTCGCTCGGGGATCTCACCATGGCAGATGGTGTCCCCAACGTGGAGAACATCCTCAAGATCGGCTATCTCAATGataagGTTGAGGaactgttagaaaagtacatgGACTCTTACGATATTGTCCTGGCGAGGGATGAAACACTTGAAGTGCCTAATTCCATACTGCAGAAGATCTTATAATCGACACCACAGAACACAGCCTGCTCAGAAAAGACTCGTATTCCAGGATATTCGGAGTCTCCTGGAAATTTCCAGCACACTGAGGCCGGCCTTTATACTTCCACATGCCTCACAAGCCATACACACTCTGCACCCCTTTTAAAAGTTATTTCCAGTCGAGATAATGAACTATTTTAATAAACACCTACATCCAAATTTTTGGTGTAAACGAATATCAAACGAAAAAAATGCATCACATCGTTTGCAGATTGGTACAAATTATTGTTTGTAGTATTTTTGATATGGAAACCTGTGTATTCATTGTTTGCAATAAACTTCGGGACTGTGAACGGTACCCAATGATACCTCGCGTTCATGAACGTCGTGAATGTGCACTTTTCAATTCGGAAGATCTGTCACAGTTCTCGGGGAATCTTTGTATCTCGTGAGTACGCAGGCTGCATGCACAGATCCAAATTAAAGCTATACTGTAAATGATTGCTTTCAAAAACAGTCATGATGTGTTGTTAGTGTTGTCCTATGTGAATGTTTTAGCATAAATGCTCATCGTTTTGGTGTTGATATTTGCACCTTTTGTTCACCTGCAGGTAGGCAATAAaactttgtttggttttttttctccagaatgtttgattttattagataaggcaagaaaaaaaaaaactttgtggaTGGATTGTATTTCTGCACAATTATATCGCTAATGGATTGCGATATTGGCACTGTAtatgcaatatacactcaccggccaatttattaggtacacctgtctaactgctcgttaatacATTTCTTATCAGCCTATCACATGGCAGCgcctcaatgcatttaggcatgtagacatggtcaggacaatctgctgcagtttaaaccaagcCGAATGATTAgaaacagagaaaatatccagtgagtggcagttctttgggtgcaaatgccttgttgatgtcagaggagaatggtcatactggtttgagctgatagaaaggcaacagtaacttaaatagccactcgttacaaccgaggtatggagaagaacatctctgaacacacaacacgtccaaccttgaagcagatgggctacagcagcagaagaccacaccgggtgccactcctgtcagctaagaacaggaaaccggggctacaattcgcacaggcgcAACAAAATTGgattaaggattaaggcagttctgaaagcaaaaggtggtccaacccagtactagtaaagcgtacctaataaagtggccagtgagtgtatacataACACACAATGATTTTATGCATTGACTGCATATTTAAATTTGATCAATCAGATGGGGCCTTACTAGCTTAAACCCCACCTTCACAGTAGTtactgttctgctattggctgaagCAGCCCAaaggtgaacccagagctgaaaataaacactaatggcgGGAGCCGAGACGAGGATAATGACAATGGCCAATCAGATTCAGAATATCAGCTGACATTTACTTACTTATAGCGTTTTAACTGTGTCCACATTGATGCATAATATATTTTaccagttttttattaatttgaaaacttatttaaaaccagctgggccagttggcatttctgtgtggagtttgcatgatctccccttgttggtttcctgcgggtgctccagtttcccccacagtccaaagacatgtggtacaggtgaattgaataaactaaattgaccgttgtgtatgtgtgaatgagtgtgtatttatgtttcccagtactgggttacagctggaagggcatctgctgtgtaaaacatcctcgacaagttggtggttcattctgctgtggctgaaggaaaatgaatgaaaaaagcatTTTAgggaagtattattattattagtttatattattagtagtattgccTATTTTTTTAGTATCATGCAGCTCTTATAAATGGTTGGAAACAATTAATCAACTATAACTAGGTGTTAATTGGTAATAAAGACCATAATTTTATTCTTACTTTAATGGGTGATGTTTGTATTATTGGAAATATGAAATCctattcatttatcatttattttgagACTGATTTCATAATGGCTGCAGTGATACTGTATGTTCTACAGCCGTTAAATACCGCCTAGTTACCTTTTCACCACTGTATAGTGTATAATCTTATTAACAGGTTTTggttattagcctccctgaattattagaccgcctgttttttttcccccaatttctgttttacagaaagctgattttttaaaacacatttcaaaacataatagttttattaactcatttctaataactgatttattttatctttgccatgatgacagtaaataatatttgactagatattttcaagacacttctatacagcttaaagtgacacttaaaggcttaactaggttaattaggttaactaggcatgttagggtaattaggcaagttattgtataacgatggtttgttctgtagactatcgaaaaaaatctagtttaaaggggataataattttgttcctaaaatgttttgttttttattaaaaactgcttttattctagccgaaataaaacaaataagactttttctagaaggaaaaatattatcagacatactctgaaaatttccttgctctgttaaacatcgtttgtggaatattttatctttgccatggatgttttccagggatgggttgcggcttgaagggcagcctgcgtaaaacatgtgatgcataagttggcggttcatttctgttccgcaggtctttggacttgtgggggaaaccggagcacctggaggaaacccatggaaAACatgggagaacacgcaaactccactcagaaatgccaactgacccagccgggactggaACTAGCGATGAGAACATACCAGTGCTGACAGAAGGTGGCAGCAATGCGCAAGACTTGCGATACGCCTATAGAAAACTGCAGAAGAAGAAgcggtaaaaaataaaaacagaaggaAAATGCCTGACATAAATGAACCACAGGctttaattaaaagattcaatttACCCTTTTTCATTTCAAACACATGAGGCTAACAAAAATTGAAGAAACAAGGAGAGCGACATCCAAACAATGGCTGTGAGaagtttgtttttatgttttgaatGTTAACGCTAACTTACACTGTTAGATAGATCCGCCGTAATTTATGTAACGTTTAATAAAAAAGCTTAATAACGAGTTATGTGTCATTAGTTTACGTTGTTATGTAGTGATATTTGTTCCTGTACTAAATACAGCTTTTGAGACATAATGTgttgtatttacatatttaataataaatgctaCAGCGTACTGTAGTAATAACTAtcgtgaactgataaactgtaataaatactgaagtACTTTAGTATTTGCTACTGTAGAAAACGGTTATTTACATCACTATAAGTTACTTGTATTACCACAGCGACTACAGACTTGCTAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-439 Predicted to enable 5'-nucleotidase activity. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in brain; myotome; and yolk syncytial layer. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA).

Ensembl:

ensembl_id ENSDART00000187916

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022103 lncRNA downstream 562286 6648030 ~ 6651719 (-) True XLOC_010428
TCONS_00022102 lncRNA downstream 578709 6625848 ~ 6635296 (-) False XLOC_010427
TCONS_00020488 lncRNA downstream 578709 6634106 ~ 6635296 (-) True XLOC_010427
TCONS_00022101 lncRNA downstream 579026 6620949 ~ 6634979 (-) False XLOC_010427
TCONS_00021783 lncRNA downstream 587839 6605385 ~ 6626166 (-) False XLOC_010427
TCONS_00022105 lncRNA upstream 281080 7508101 ~ 7621115 (-) False XLOC_010436
TCONS_00022106 lncRNA upstream 324250 7551271 ~ 7554300 (-) False XLOC_010436
TCONS_00022107 lncRNA upstream 324250 7551271 ~ 7579989 (-) False XLOC_010436
TCONS_00022108 lncRNA upstream 324250 7551271 ~ 7595139 (-) False XLOC_010436
TCONS_00020504 lncRNA upstream 324250 7551271 ~ 7621114 (-) False XLOC_010436
TCONS_00020494 mRNA downstream 269078 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020492 mRNA downstream 364224 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020491 mRNA downstream 364251 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020490 mRNA downstream 392077 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020489 mRNA downstream 392078 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020501 mRNA upstream 88123 7315144 ~ 7362806 (-) True XLOC_010433
TCONS_00020502 mRNA upstream 149450 7376471 ~ 7379328 (-) True XLOC_010434
TCONS_00020503 mRNA upstream 203977 7430998 ~ 7443388 (-) True XLOC_010435
TCONS_00020505 mRNA upstream 461347 7688368 ~ 7692568 (-) True XLOC_010437
TCONS_00020508 mRNA upstream 515637 7742658 ~ 7793457 (-) True XLOC_010439
TCONS_00020493 other downstream 384370 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 1343316 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 1356024 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 2106588 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 2152376 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020506 other upstream 466860 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 467773 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1060750 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020525 other upstream 1145244 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 1251859 8478880 ~ 8479009 (-) True XLOC_010450

Expression Profile

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