RNA id: TU561951


Basic Information

Item Value
RNA id TU561951
length 524
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G489861
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6623108 ~ 6623631 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGCTCCCTTTGCCACAGTTGGACCGGCTGCATAATAATCGGATGTTCGCACAGTAGGAGGGAGTGCTAAATGTCATCCGCCGTGCTAAAATAAAGCTGGAAAAAGAGGAAATAACTGTACTCTTGAAAACATCCTTTTCATTTCTTGAGGGACAGCAGCGATTAGGGATTGGGAAGAAATGAATATTTCATAGATAAGAATAACAAGATTAAATTCTCTTTGAGGATGGTTTTCAGAGCCCGCTACAATGGGCAAAGTTACCGAAACAAAGAGAATGATAAATAGGTTTGGCTAAGCAGAGATGAACCAGGGTGCTCACACAACTGTTGGGGCCTTACTGTAGGACAAATACGCTTGGATAGAAGAGTTTCTGAACTGCTTAAAATGGCTGCATTCCTCAATATTATAAAGTCTTACACAACAGAGTGCAACACCTGCCCCCCTTTTTCAGCAGCCTTGGTTCCGTAAGTATTTTTCCCATAGGGATTTTAAAATTTAAAGCCATGAGCCAAACCAACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561950 lncRNA downstream 107 6622617 ~ 6623001 (-) True G489860
TU561900 lncRNA downstream 78399 6541318 ~ 6544709 (-) True G489813
TU561916 lncRNA downstream 84914 6535443 ~ 6538194 (-) True G489826
TU561679 lncRNA downstream 198110 6424703 ~ 6424998 (-) True G489623
TU561678 lncRNA downstream 202572 6420250 ~ 6420536 (-) True G489622
TU561952 lncRNA upstream 2322 6625953 ~ 6626228 (-) True G489862
TU561915 lncRNA upstream 26029 6649660 ~ 6649895 (-) True G489825
TU561968 lncRNA upstream 47045 6670676 ~ 6670947 (-) False G489875
TU561969 lncRNA upstream 47045 6670676 ~ 6671097 (-) True G489875
TU561999 lncRNA upstream 154166 6777797 ~ 6780846 (-) False G489897
CI01000340_06503908_06507226.mRNA mRNA downstream 114900 6503765 ~ 6508208 (-) True CI01000340_06503908_06507226
CI01000340_06470405_06482135.mRNA mRNA downstream 139928 6469146 ~ 6483180 (-) True CI01000340_06470405_06482135
CI01000340_06406898_06410323.mRNA mRNA downstream 211870 6405499 ~ 6411238 (-) True CI01000340_06406898_06410323
CI01000340_06374920_06376111.mRNA mRNA downstream 245263 6374811 ~ 6377845 (-) True CI01000340_06374920_06376111
CI01000340_06345631_06346302.mRNA mRNA downstream 275548 6345613 ~ 6347560 (-) True CI01000340_06345631_06346302
CI01000340_06628894_06640081.mRNA mRNA upstream 5238 6628869 ~ 6640081 (-) True CI01000340_06628894_06640081
CI01000340_06642326_06648797.mRNA mRNA upstream 17318 6640949 ~ 6648797 (-) True CI01000340_06642326_06648797
CI01000340_06695274_06700680.mRNA mRNA upstream 71054 6694685 ~ 6701455 (-) True CI01000340_06695274_06700680
CI01000340_06704533_06711160.mRNA mRNA upstream 79999 6703630 ~ 6711160 (-) True CI01000340_06704533_06711160
CI01000340_06713482_06725854.mRNA mRNA upstream 89570 6713201 ~ 6725854 (-) True CI01000340_06713482_06725854
TU561564 other downstream 295736 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 402466 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 1297964 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 1964047 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 2026847 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 2175570 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 3398261 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 3733553 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 5050115 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 5443546 12067177 ~ 12106251 (-) False G493266

Expression Profile