RNA id: TU562038


Basic Information

Item Value
RNA id TU562038
length 295
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G489930
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6932624 ~ 6933194 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAACATGATGCATTAATAGATGGGGGGTGAAAACATTTGGAATTTGAAGATCAAGGTAAATTGTATTTAATTTGTCTTCCGGGAAACATGCAAGTATCTTCTGTTGCTTCCGAAGGGCAGTACTAAATGAAAAAAAAATGATATTCAAGCGAAATAAGAAAAATTTGGACCTCTTCATCCTGTTCAAGAGTTTTCACCCCCCGACTCTTAATGCATCGTGTTTCCTTCTGAAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCAGTTGTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561999 lncRNA downstream 151778 6777797 ~ 6780846 (-) False G489897
TU562000 lncRNA downstream 151778 6777797 ~ 6780846 (-) False G489897
TU562003 lncRNA downstream 151778 6777797 ~ 6780846 (-) False G489897
TU562004 lncRNA downstream 151778 6777797 ~ 6780846 (-) True G489897
TU561969 lncRNA downstream 261527 6670676 ~ 6671097 (-) True G489875
TU562043 lncRNA upstream 37052 6970246 ~ 6970577 (-) True G489934
TU562049 lncRNA upstream 43501 6976695 ~ 6976932 (-) True G489940
TU562093 lncRNA upstream 91621 7024815 ~ 7025051 (-) True G489975
TU562097 lncRNA upstream 95793 7028987 ~ 7029255 (-) True G489979
TU562252 lncRNA upstream 133746 7066940 ~ 7067314 (-) True G490119
CI01000340_06795551_06907442.mRNA mRNA downstream 25182 6795551 ~ 6907442 (-) True CI01000340_06795551_06907442
CI01000340_06755244_06767885.mRNA mRNA downstream 164739 6755244 ~ 6767885 (-) True CI01000340_06755244_06767885
CI01000340_06713482_06725854.mRNA mRNA downstream 206770 6713201 ~ 6725854 (-) True CI01000340_06713482_06725854
CI01000340_06704533_06711160.mRNA mRNA downstream 221464 6703630 ~ 6711160 (-) True CI01000340_06704533_06711160
CI01000340_06695274_06700680.mRNA mRNA downstream 231169 6694685 ~ 6701455 (-) True CI01000340_06695274_06700680
CI01000340_06943742_06951136.mRNA mRNA upstream 10548 6943742 ~ 6951322 (-) True CI01000340_06943742_06951136
CI01000340_06967769_06969169.mRNA mRNA upstream 33808 6967002 ~ 6969208 (-) True CI01000340_06967769_06969169
CI01000340_06980994_06986987.mRNA mRNA upstream 47729 6980923 ~ 6988414 (-) True CI01000340_06980994_06986987
CI01000340_07094782_07128154.mRNA mRNA upstream 161297 7094491 ~ 7128242 (-) True CI01000340_07094782_07128154
CI01000340_07316270_07338395.mRNA mRNA upstream 382257 7315451 ~ 7339343 (-) True CI01000340_07316270_07338395
TU561564 other downstream 605252 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 711982 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 1607480 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 2273563 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 2336363 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 1866007 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 3088698 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 3423990 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 4740552 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 5133983 12067177 ~ 12106251 (-) False G493266

Expression Profile