RNA id: TU562234


Basic Information

Item Value
RNA id TU562234
length 355
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G490101
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7084345 ~ 7084699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAACCCTCGGTTAGTTATGAGGACTTGTTGGACTTGCATTGATCATCGTCAGCTAACACTATTTTTTGGACCAACACTGGACTGCGAGGAGAAGTAATATTTTATCACTACTGAGTCTCTACCTAAAAAAAAAGAGAGAAAAAAAAAGAAAGAATCTGGAAAAAAAGCAGTCAGCAAAAATCCCTCGACGCTACAAAATGACTTGTGTATTTGGGGATAAAATATACAGCTGTTCTTCGGAAATATTTATTAAACGTCAAATTGATGGTGTCAACGGTGCCAGCCTACAGCCTCCCAATGCCACTGGTGCTGACGACGCACAGCTATCCCTCAAAAAGGACCCTGTGGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562252 lncRNA downstream 17031 7066940 ~ 7067314 (-) True G490119
TU562097 lncRNA downstream 55090 7028987 ~ 7029255 (-) True G489979
TU562093 lncRNA downstream 59294 7024815 ~ 7025051 (-) True G489975
TU562049 lncRNA downstream 107413 6976695 ~ 6976932 (-) True G489940
TU562043 lncRNA downstream 113768 6970246 ~ 6970577 (-) True G489934
TU562259 lncRNA upstream 46742 7131441 ~ 7131700 (-) True G490126
TU562263 lncRNA upstream 61673 7146372 ~ 7146610 (-) True G490130
TU562265 lncRNA upstream 64260 7148959 ~ 7149301 (-) True G490132
TU562267 lncRNA upstream 68799 7153498 ~ 7153779 (-) True G490134
TU562349 lncRNA upstream 181069 7265768 ~ 7303052 (-) True G490215
CI01000340_06980994_06986987.mRNA mRNA downstream 95931 6980923 ~ 6988414 (-) True CI01000340_06980994_06986987
CI01000340_06967769_06969169.mRNA mRNA downstream 115137 6967002 ~ 6969208 (-) True CI01000340_06967769_06969169
CI01000340_06943742_06951136.mRNA mRNA downstream 133023 6943742 ~ 6951322 (-) True CI01000340_06943742_06951136
CI01000340_06795551_06907442.mRNA mRNA downstream 176903 6795551 ~ 6907442 (-) True CI01000340_06795551_06907442
CI01000340_06755244_06767885.mRNA mRNA downstream 316460 6755244 ~ 6767885 (-) True CI01000340_06755244_06767885
CI01000340_07094782_07128154.mRNA mRNA upstream 9792 7094491 ~ 7128242 (-) True CI01000340_07094782_07128154
CI01000340_07316270_07338395.mRNA mRNA upstream 230752 7315451 ~ 7339343 (-) True CI01000340_07316270_07338395
CI01000340_07347497_07355645.mRNA mRNA upstream 262121 7346820 ~ 7356850 (-) True CI01000340_07347497_07355645
CI01000340_07543307_07544545.mRNA mRNA upstream 458320 7543019 ~ 7544752 (-) True CI01000340_07543307_07544545
CI01000340_07546144_07547567.mRNA mRNA upstream 460980 7545679 ~ 7547567 (-) True CI01000340_07546144_07547567
TU561564 other downstream 756973 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 863703 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 1759201 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 2425284 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 2488084 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 1714502 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 2937193 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 3272485 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 4589047 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4982478 12067177 ~ 12106251 (-) False G493266

Expression Profile