RNA id: TU562265


Basic Information

Item Value
RNA id TU562265
length 343
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G490132
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7148959 ~ 7149301 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACGAATCCAGCAATTGGGTTGTTTTAACCCAGCGGTTAGGTTAAATGTTTGCCCAACGTGCTGGACAGTTTTATTTAACCCAACTGTTTTTTTAAATTACTATATGGCTGGCTTAAAATGAACCCAAAATAGGCTGGAAATTAAAAATCAGACACATAATTACTAGAGGCAACAATAGTAATCAAAAGGTGTAGAATAGATCTGCTACGCTGCTGCTGCAGAGAAAGTACGGGACTTGCTACTGCCAATACATACATGACACGCTGCTGTGAGCAAGTAAGAGCTGCTGCTGCTGTACAATATAGTGTACATGAATTACCCATAGCAGATCTATACAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562263 lncRNA downstream 2349 7146372 ~ 7146610 (-) True G490130
TU562259 lncRNA downstream 17259 7131441 ~ 7131700 (-) True G490126
TU562234 lncRNA downstream 64260 7084345 ~ 7084699 (-) True G490101
TU562252 lncRNA downstream 81645 7066940 ~ 7067314 (-) True G490119
TU562097 lncRNA downstream 119704 7028987 ~ 7029255 (-) True G489979
TU562267 lncRNA upstream 4197 7153498 ~ 7153779 (-) True G490134
TU562349 lncRNA upstream 116467 7265768 ~ 7303052 (-) True G490215
TU563423 lncRNA upstream 266109 7415410 ~ 7415669 (-) True G491147
TU563430 lncRNA upstream 289523 7438824 ~ 7439035 (-) True G491154
TU563446 lncRNA upstream 301852 7451153 ~ 7456580 (-) True G491168
CI01000340_07094782_07128154.mRNA mRNA downstream 20717 7094491 ~ 7128242 (-) True CI01000340_07094782_07128154
CI01000340_06980994_06986987.mRNA mRNA downstream 160545 6980923 ~ 6988414 (-) True CI01000340_06980994_06986987
CI01000340_06967769_06969169.mRNA mRNA downstream 179751 6967002 ~ 6969208 (-) True CI01000340_06967769_06969169
CI01000340_06943742_06951136.mRNA mRNA downstream 197637 6943742 ~ 6951322 (-) True CI01000340_06943742_06951136
CI01000340_06795551_06907442.mRNA mRNA downstream 241517 6795551 ~ 6907442 (-) True CI01000340_06795551_06907442
CI01000340_07316270_07338395.mRNA mRNA upstream 166150 7315451 ~ 7339343 (-) True CI01000340_07316270_07338395
CI01000340_07347497_07355645.mRNA mRNA upstream 197519 7346820 ~ 7356850 (-) True CI01000340_07347497_07355645
CI01000340_07543307_07544545.mRNA mRNA upstream 393718 7543019 ~ 7544752 (-) True CI01000340_07543307_07544545
CI01000340_07546144_07547567.mRNA mRNA upstream 396378 7545679 ~ 7547567 (-) True CI01000340_07546144_07547567
CI01000340_07651745_07673195.mRNA mRNA upstream 501687 7650988 ~ 7673671 (-) True CI01000340_07651745_07673195
TU561564 other downstream 821587 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 928317 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 1823815 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 2489898 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 2552698 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 1649900 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 2872591 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 3207883 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 4524445 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4917876 12067177 ~ 12106251 (-) False G493266

Expression Profile