RNA id: TU562176


Basic Information

Item Value
RNA id TU562176
length 230
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G490045
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7153294 ~ 7153523 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATAGCGTCTTAGCGCAGTGACCCAGTTAGGGATAGAGACACTGGCAAATATATCTGTGAGGATTTGCCAAAGGGCAAAGGAGATAAGTGACAAAATAGAAAATGCTTTAATGATGATCATAAAGGTCTTGTGTGGTGGAGTGTTGGGGGCACAGCTTCAGTGTTCCTTCTCCTGTTAGCTGTTCACACAGCCTACGGGAGAAAATTTCACTTCCCTTACCCAACGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562143 lncRNA upstream 61161 7091867 ~ 7092133 (+) True G490013
TU562138 lncRNA upstream 67996 7084977 ~ 7085298 (+) True G490008
TU562102 lncRNA upstream 117452 7035644 ~ 7035842 (+) True G489984
TU562103 lncRNA upstream 118335 7034629 ~ 7034959 (+) True G489985
TU562096 lncRNA upstream 124086 7028892 ~ 7029208 (+) True G489978
TU562314 lncRNA downstream 94694 7248217 ~ 7248424 (+) True G490181
TU562435 lncRNA downstream 341156 7494679 ~ 7495208 (+) True G490294
TU562430 lncRNA downstream 342919 7496442 ~ 7502162 (+) False G490290
TU562431 lncRNA downstream 342919 7496442 ~ 7502162 (+) True G490290
TU562488 lncRNA downstream 364843 7518366 ~ 7518584 (+) True G490347
CI01000340_06927893_06929574.mRNA mRNA upstream 223621 6927788 ~ 6929673 (+) True CI01000340_06927893_06929574
CI01000340_06769655_06778207.mRNA mRNA upstream 375087 6769655 ~ 6778207 (+) True CI01000340_06769655_06778207
CI01000340_06702811_06703207.mRNA mRNA upstream 449863 6702811 ~ 6703431 (+) False CI01000340_06702811_06703207
CI01000340_06677894_06691556.mRNA mRNA upstream 461725 6677894 ~ 6691569 (+) True CI01000340_06677894_06691556
CI01000340_06656187_06669677.mRNA mRNA upstream 481825 6656022 ~ 6671469 (+) True CI01000340_06656187_06669677
CI01000340_07451476_07454866.mRNA mRNA downstream 297851 7451374 ~ 7455412 (+) True CI01000340_07451476_07454866
CI01000340_07482030_07483694.mRNA mRNA downstream 328507 7482030 ~ 7483902 (+) True CI01000340_07482030_07483694
CI01000340_07486593_07487826.mRNA mRNA downstream 332954 7486477 ~ 7487826 (+) True CI01000340_07486593_07487826
CI01000340_07641488_07649078.mRNA mRNA downstream 487623 7641146 ~ 7649494 (+) True CI01000340_07641488_07649078
CI01000340_07692812_07697115.mRNA mRNA downstream 539289 7692812 ~ 7697333 (+) True CI01000340_07692812_07697115
TU561697 other upstream 452506 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 2488109 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 2751798 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 3170749 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 4221494 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 1885289 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1971661 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 2081450 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 2677950 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 3498160 10651683 ~ 10652694 (+) True G492194

Expression Profile