RNA id: TU562349


Basic Information

Item Value
RNA id TU562349
length 642
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G490215
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7265768 ~ 7303052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACAAATTCATGCTGTTGCTTGATTAAGAGCAACACTTTACATAAAAATAGCGTGCATAAGAAATAATGGAACTCCACGTTGACAGGAATACAAGGCGGCAAACAGGACAAAAGCTAATGTGCGCATGTCATAAAGTCATTCTGATTAAAAGCGCCGCCACATGTAAACACCATATCGGATAAGATAACGTCTCATGTAAACAGTCCACAGAAAAACACTCAGAGATTATCACCAAGGCAAATCAAGACTTCGCGATGTGTGTGAGTGTGTGTGTGTCTTAAATAGTGTGAGTGTGATGCGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAATGAGGGCCCATGGGAAACGTAGTCCGAATGAGAACTGATCAGTATTCCAGTGATGGCTCCCTCTGGCGGTCCGGAGGAAAGGCCGAGGGAGCCACATTCGTGACAGTTACCATGCCATCATTATTAAGAAATTCCAAGTATCATACGTATTGCTTTTTTTTTTTTTTTTTATATCTCAATATTGTGAGAAAGAAAGAAACTAAATAATGACAAAATATTACTTTGATTTTTTTTTTTTTTTTCAGTTCACAACTAGTGATAACCACTTGTCCTTGCTGAAAATCCATTCTAAAGAATGGAGAGTGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562267 lncRNA downstream 111989 7153498 ~ 7153779 (-) True G490134
TU562265 lncRNA downstream 116467 7148959 ~ 7149301 (-) True G490132
TU562263 lncRNA downstream 119158 7146372 ~ 7146610 (-) True G490130
TU562259 lncRNA downstream 134068 7131441 ~ 7131700 (-) True G490126
TU562234 lncRNA downstream 181069 7084345 ~ 7084699 (-) True G490101
TU563423 lncRNA upstream 112358 7415410 ~ 7415669 (-) True G491147
TU563430 lncRNA upstream 135772 7438824 ~ 7439035 (-) True G491154
TU563446 lncRNA upstream 148101 7451153 ~ 7456580 (-) True G491168
TU563460 lncRNA upstream 183396 7486448 ~ 7488082 (-) True G491179
TU563462 lncRNA upstream 201697 7504749 ~ 7504955 (-) True G491180
CI01000340_07094782_07128154.mRNA mRNA downstream 137526 7094491 ~ 7128242 (-) True CI01000340_07094782_07128154
CI01000340_06980994_06986987.mRNA mRNA downstream 277354 6980923 ~ 6988414 (-) True CI01000340_06980994_06986987
CI01000340_06967769_06969169.mRNA mRNA downstream 296560 6967002 ~ 6969208 (-) True CI01000340_06967769_06969169
CI01000340_06943742_06951136.mRNA mRNA downstream 314446 6943742 ~ 6951322 (-) True CI01000340_06943742_06951136
CI01000340_06795551_06907442.mRNA mRNA downstream 358326 6795551 ~ 6907442 (-) True CI01000340_06795551_06907442
CI01000340_07316270_07338395.mRNA mRNA upstream 12399 7315451 ~ 7339343 (-) True CI01000340_07316270_07338395
CI01000340_07347497_07355645.mRNA mRNA upstream 43768 7346820 ~ 7356850 (-) True CI01000340_07347497_07355645
CI01000340_07543307_07544545.mRNA mRNA upstream 239967 7543019 ~ 7544752 (-) True CI01000340_07543307_07544545
CI01000340_07546144_07547567.mRNA mRNA upstream 242627 7545679 ~ 7547567 (-) True CI01000340_07546144_07547567
CI01000340_07651745_07673195.mRNA mRNA upstream 347936 7650988 ~ 7673671 (-) True CI01000340_07651745_07673195
TU561564 other downstream 938396 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1045126 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 1940624 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 2606707 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 2669507 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 1496149 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 2718840 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 3054132 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 4370694 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4764125 12067177 ~ 12106251 (-) False G493266

Expression Profile