RNA id: TU562431


Basic Information

Item Value
RNA id TU562431
length 1008
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G490290
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7496442 ~ 7502162 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTATGATAGTACAATGTTATGGCAGTGTCTTTTGTGTCCAGTGTTGCATTTCTTTACCTGTATAACCGATTACCTTTGGCAAAAGGACAACCCACAATGCCTTATTAATGAAAATTACAATATGTTTAATACATAAGGGATAATCCATGGCTAGGTGTACATGATTTTAATACAATGTGGAGGCAAACAATTTAAATAAATAAATAAAAACACCTGATGCACAGCGGTAAACACGAAAGCTCACACACACACACACACACACAAACAAGCTTCCGTGTTTGCCATATGTGATGTGTTATATATATGAGACAGGGTATGGTTGTAAAACTTTTTGATTCAACATCTGTAACTCACTGAATTAACAGAAACCTCTCAGGTTTTATTAAAAATGTCTTTTTGTATGTGTATAATGACACTTTTTTTTTGTTTGGGGTGAACTAAGTGTGTCTAAACTTTTAACTTGTAGTTTACATATTTTACAACAAAGCACTGTCTCATAGTAATGTGAAACTTCTACGCATGCGCGTATCCCCAATACATTTCCATGCTTAGGAGAAGGTGGTTACCGTGGTAACGAACGACGCCCGCTTGTGCTCACCGGTGGAAACTGTTGCATGAACGCTACGGCTTACAAAAGAATCAGATTAACGAAGGAATATGACATTTATTCGTTAAGTTTAAGTGTAATGTCTTCATAAAACGTGTGGGTTTATGTGTTAATATTAACACGTATGTCACGGATGAGTCTAGGCTATTTGATGTGCAGGTTTGCCTAGACATACAGAAAACACATTTTAAGATCATTAGAATGTATGCAAAACTGCTTGAAAATATGTTCAGCAGATGTTTGTAGACAGCTTTCCAGATGAAGCGTTCTTTAACAGGTGTGTGCTGTCTTATCATTATCTGTTTGAAATCCATGGATCACCATTTTGTGTTGCTGCTTGTTACACAAAAATACAAAATGAATGTTACAAATGAATAAAAGACTATATCTCATATACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562435 lncRNA upstream 1234 7494679 ~ 7495208 (+) True G490294
TU562314 lncRNA upstream 248018 7248217 ~ 7248424 (+) True G490181
TU562176 lncRNA upstream 342919 7153294 ~ 7153523 (+) True G490045
TU562143 lncRNA upstream 404309 7091867 ~ 7092133 (+) True G490013
TU562138 lncRNA upstream 411144 7084977 ~ 7085298 (+) True G490008
TU562488 lncRNA downstream 16204 7518366 ~ 7518584 (+) True G490347
TU562494 lncRNA downstream 30318 7532480 ~ 7532700 (+) True G490353
TU562507 lncRNA downstream 50452 7552614 ~ 7553152 (+) True G490361
TU562520 lncRNA downstream 63463 7565625 ~ 7565860 (+) True G490370
TU562527 lncRNA downstream 74124 7576286 ~ 7576575 (+) True G490377
CI01000340_07486593_07487826.mRNA mRNA upstream 8616 7486477 ~ 7487826 (+) True CI01000340_07486593_07487826
CI01000340_07482030_07483694.mRNA mRNA upstream 12540 7482030 ~ 7483902 (+) True CI01000340_07482030_07483694
CI01000340_07451476_07454866.mRNA mRNA upstream 41030 7451374 ~ 7455412 (+) True CI01000340_07451476_07454866
CI01000340_06927893_06929574.mRNA mRNA upstream 566769 6927788 ~ 6929673 (+) True CI01000340_06927893_06929574
CI01000340_06769655_06778207.mRNA mRNA upstream 718235 6769655 ~ 6778207 (+) True CI01000340_06769655_06778207
CI01000340_07641488_07649078.mRNA mRNA downstream 138984 7641146 ~ 7649494 (+) True CI01000340_07641488_07649078
CI01000340_07692812_07697115.mRNA mRNA downstream 190650 7692812 ~ 7697333 (+) True CI01000340_07692812_07697115
CI01000340_07698442_07700739.mRNA mRNA downstream 196280 7698442 ~ 7700739 (+) True CI01000340_07698442_07700739
CI01000340_07701724_07717637.mRNA mRNA downstream 199224 7701386 ~ 7717852 (+) True CI01000340_07701724_07717637
CI01000340_07721395_07728614.mRNA mRNA downstream 219233 7721395 ~ 7728752 (+) True CI01000340_07721395_07728614
TU561697 other upstream 795654 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 2831257 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3094946 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 3513897 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 4564642 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 1536650 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1623022 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1732811 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 2329311 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 3149521 10651683 ~ 10652694 (+) True G492194