RNA id: TU563465


Basic Information

Item Value
RNA id TU563465
length 212
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G491183
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7508979 ~ 7509190 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGTCTGACTCTGACATGGCGAACGGGAACATGGTTTGTGTAACATTAGCAACACATCATTAGCAGCTGTGTGATAACAGTCAAGCAAAAGGCTAATCATATGAATTACCGTTATGTGTCCAACATTGTAAAGAGCGATACCATTGTGCAGCGTTTACCTCAGTAAGTTGACCAAGTGGATCTCTGAGCTTGTGCGAGTGAGTGGAGGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563462 lncRNA downstream 4024 7504749 ~ 7504955 (-) True G491180
TU563460 lncRNA downstream 20897 7486448 ~ 7488082 (-) True G491179
TU563446 lncRNA downstream 52399 7451153 ~ 7456580 (-) True G491168
TU563430 lncRNA downstream 69944 7438824 ~ 7439035 (-) True G491154
TU563423 lncRNA downstream 93310 7415410 ~ 7415669 (-) True G491147
TU563485 lncRNA upstream 20620 7529810 ~ 7530032 (-) True G491203
TU563487 lncRNA upstream 27240 7536430 ~ 7536656 (-) True G491205
TU563492 lncRNA upstream 39625 7548815 ~ 7549022 (-) True G491210
TU563519 lncRNA upstream 57486 7566676 ~ 7566906 (-) True G491232
TU563520 lncRNA upstream 60662 7569852 ~ 7570135 (-) True G491233
CI01000340_07347497_07355645.mRNA mRNA downstream 152129 7346820 ~ 7356850 (-) True CI01000340_07347497_07355645
CI01000340_07316270_07338395.mRNA mRNA downstream 169636 7315451 ~ 7339343 (-) True CI01000340_07316270_07338395
CI01000340_07094782_07128154.mRNA mRNA downstream 380737 7094491 ~ 7128242 (-) True CI01000340_07094782_07128154
CI01000340_06980994_06986987.mRNA mRNA downstream 520565 6980923 ~ 6988414 (-) True CI01000340_06980994_06986987
CI01000340_06967769_06969169.mRNA mRNA downstream 539771 6967002 ~ 6969208 (-) True CI01000340_06967769_06969169
CI01000340_07543307_07544545.mRNA mRNA upstream 33829 7543019 ~ 7544752 (-) True CI01000340_07543307_07544545
CI01000340_07546144_07547567.mRNA mRNA upstream 36489 7545679 ~ 7547567 (-) True CI01000340_07546144_07547567
CI01000340_07651745_07673195.mRNA mRNA upstream 141798 7650988 ~ 7673671 (-) True CI01000340_07651745_07673195
CI01000340_07778322_07787234.mRNA mRNA upstream 268553 7777743 ~ 7787463 (-) False CI01000340_07778322_07787234
CI01000340_07994499_07999442.mRNA mRNA upstream 485309 7994499 ~ 7999651 (-) True CI01000340_07994499_07999442
TU561564 other downstream 1181607 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1288337 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 2183835 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 2849918 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 2912718 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 1290011 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 2512702 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 2847994 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 4164556 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4557987 12067177 ~ 12106251 (-) False G493266

Expression Profile