RNA id: TU562488


Basic Information

Item Value
RNA id TU562488
length 219
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G490347
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7518366 ~ 7518584 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATTATGAGCATAGGGTCCTGTGGGGACCGCTTATTGAGGGCTTTCAATGCTCTCCCACTGAATACATGTCAGAAGACATAAAGGCTTCTCAAAGCAACACTAAGACTGTAGCCTTGACGATAAAAGAGTTGCGGTAAGATCATATTTACAAACCATTCACTAACATTTTAAAGCCTTTTGAGCCACATCCTATTTGGGTAAATAAAAGAAGTCTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562430 lncRNA upstream 16204 7496442 ~ 7502162 (+) False G490290
TU562431 lncRNA upstream 16204 7496442 ~ 7502162 (+) True G490290
TU562435 lncRNA upstream 23158 7494679 ~ 7495208 (+) True G490294
TU562314 lncRNA upstream 269942 7248217 ~ 7248424 (+) True G490181
TU562176 lncRNA upstream 364843 7153294 ~ 7153523 (+) True G490045
TU562494 lncRNA downstream 13896 7532480 ~ 7532700 (+) True G490353
TU562507 lncRNA downstream 34030 7552614 ~ 7553152 (+) True G490361
TU562520 lncRNA downstream 47041 7565625 ~ 7565860 (+) True G490370
TU562527 lncRNA downstream 57702 7576286 ~ 7576575 (+) True G490377
TU562549 lncRNA downstream 99832 7618416 ~ 7618638 (+) True G490398
CI01000340_07486593_07487826.mRNA mRNA upstream 30540 7486477 ~ 7487826 (+) True CI01000340_07486593_07487826
CI01000340_07482030_07483694.mRNA mRNA upstream 34464 7482030 ~ 7483902 (+) True CI01000340_07482030_07483694
CI01000340_07451476_07454866.mRNA mRNA upstream 62954 7451374 ~ 7455412 (+) True CI01000340_07451476_07454866
CI01000340_06927893_06929574.mRNA mRNA upstream 588693 6927788 ~ 6929673 (+) True CI01000340_06927893_06929574
CI01000340_06769655_06778207.mRNA mRNA upstream 740159 6769655 ~ 6778207 (+) True CI01000340_06769655_06778207
CI01000340_07641488_07649078.mRNA mRNA downstream 122562 7641146 ~ 7649494 (+) True CI01000340_07641488_07649078
CI01000340_07692812_07697115.mRNA mRNA downstream 174228 7692812 ~ 7697333 (+) True CI01000340_07692812_07697115
CI01000340_07698442_07700739.mRNA mRNA downstream 179858 7698442 ~ 7700739 (+) True CI01000340_07698442_07700739
CI01000340_07701724_07717637.mRNA mRNA downstream 182802 7701386 ~ 7717852 (+) True CI01000340_07701724_07717637
CI01000340_07721395_07728614.mRNA mRNA downstream 202811 7721395 ~ 7728752 (+) True CI01000340_07721395_07728614
TU561697 other upstream 817578 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 2853181 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3116870 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 3535821 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 4586566 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 1520228 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1606600 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1716389 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 2312889 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 3133099 10651683 ~ 10652694 (+) True G492194

Expression Profile