RNA id: TU562494


Basic Information

Item Value
RNA id TU562494
length 221
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G490353
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7532480 ~ 7532700 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGATGACTCAGTGAGCTCCATTGCCAGCAAGATAATTAACACTTTCAGATGCCCAGAAAGCTACTAAAGACATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACCTTAATGTTATTAAGTGATGAGAATACTTTTCGTGCGCCAAAAAAACCCAAAATAACGACTTTATTCAACAATATCTAGTGATGGCCGATTTCAAAACACAGCCTAATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562488 lncRNA upstream 13896 7518366 ~ 7518584 (+) True G490347
TU562430 lncRNA upstream 30318 7496442 ~ 7502162 (+) False G490290
TU562431 lncRNA upstream 30318 7496442 ~ 7502162 (+) True G490290
TU562435 lncRNA upstream 37272 7494679 ~ 7495208 (+) True G490294
TU562314 lncRNA upstream 284056 7248217 ~ 7248424 (+) True G490181
TU562507 lncRNA downstream 19914 7552614 ~ 7553152 (+) True G490361
TU562520 lncRNA downstream 32925 7565625 ~ 7565860 (+) True G490370
TU562527 lncRNA downstream 43586 7576286 ~ 7576575 (+) True G490377
TU562549 lncRNA downstream 85716 7618416 ~ 7618638 (+) True G490398
TU562550 lncRNA downstream 87526 7620226 ~ 7620474 (+) True G490399
CI01000340_07486593_07487826.mRNA mRNA upstream 44654 7486477 ~ 7487826 (+) True CI01000340_07486593_07487826
CI01000340_07482030_07483694.mRNA mRNA upstream 48578 7482030 ~ 7483902 (+) True CI01000340_07482030_07483694
CI01000340_07451476_07454866.mRNA mRNA upstream 77068 7451374 ~ 7455412 (+) True CI01000340_07451476_07454866
CI01000340_06927893_06929574.mRNA mRNA upstream 602807 6927788 ~ 6929673 (+) True CI01000340_06927893_06929574
CI01000340_06769655_06778207.mRNA mRNA upstream 754273 6769655 ~ 6778207 (+) True CI01000340_06769655_06778207
CI01000340_07641488_07649078.mRNA mRNA downstream 108446 7641146 ~ 7649494 (+) True CI01000340_07641488_07649078
CI01000340_07692812_07697115.mRNA mRNA downstream 160112 7692812 ~ 7697333 (+) True CI01000340_07692812_07697115
CI01000340_07698442_07700739.mRNA mRNA downstream 165742 7698442 ~ 7700739 (+) True CI01000340_07698442_07700739
CI01000340_07701724_07717637.mRNA mRNA downstream 168686 7701386 ~ 7717852 (+) True CI01000340_07701724_07717637
CI01000340_07721395_07728614.mRNA mRNA downstream 188695 7721395 ~ 7728752 (+) True CI01000340_07721395_07728614
TU561697 other upstream 831692 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 2867295 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3130984 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 3549935 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 4600680 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 1506112 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1592484 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1702273 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 2298773 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 3118983 10651683 ~ 10652694 (+) True G492194

Expression Profile