RNA id: TU562527


Basic Information

Item Value
RNA id TU562527
length 290
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G490377
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7576286 ~ 7576575 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGGTTCATGAGTTCACGTTTGACAAAAACTTCCTCTGTGCTTACGCCTCACTTCTTGCACGGGTTTCACTATGCGCTCACGTCATGCTTCACAATGTGCTCATATTTACGTCAAGCGTGAACTCATGATCTCGCGTTTGACATTTGTCTGGAAGCGATGCTTTGTAGATAAAAAAGTTTAAAATATCAGTATTTATCTCACACACACCTATTGCTTGGCTTCAGAAGACATTGATTGATCAACTGGGGTCGTAGGGATTACTGTTGTGTTCACTTTTTTACATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562520 lncRNA upstream 10426 7565625 ~ 7565860 (+) True G490370
TU562507 lncRNA upstream 23134 7552614 ~ 7553152 (+) True G490361
TU562494 lncRNA upstream 43586 7532480 ~ 7532700 (+) True G490353
TU562488 lncRNA upstream 57702 7518366 ~ 7518584 (+) True G490347
TU562430 lncRNA upstream 74124 7496442 ~ 7502162 (+) False G490290
TU562549 lncRNA downstream 41841 7618416 ~ 7618638 (+) True G490398
TU562550 lncRNA downstream 43651 7620226 ~ 7620474 (+) True G490399
TU562552 lncRNA downstream 56179 7632754 ~ 7632973 (+) True G490401
TU562429 lncRNA downstream 94849 7671424 ~ 7672360 (+) True G490289
TU562571 lncRNA downstream 98480 7675055 ~ 7675269 (+) True G490417
CI01000340_07486593_07487826.mRNA mRNA upstream 88460 7486477 ~ 7487826 (+) True CI01000340_07486593_07487826
CI01000340_07482030_07483694.mRNA mRNA upstream 92384 7482030 ~ 7483902 (+) True CI01000340_07482030_07483694
CI01000340_07451476_07454866.mRNA mRNA upstream 120874 7451374 ~ 7455412 (+) True CI01000340_07451476_07454866
CI01000340_06927893_06929574.mRNA mRNA upstream 646613 6927788 ~ 6929673 (+) True CI01000340_06927893_06929574
CI01000340_06769655_06778207.mRNA mRNA upstream 798079 6769655 ~ 6778207 (+) True CI01000340_06769655_06778207
CI01000340_07641488_07649078.mRNA mRNA downstream 64571 7641146 ~ 7649494 (+) True CI01000340_07641488_07649078
CI01000340_07692812_07697115.mRNA mRNA downstream 116237 7692812 ~ 7697333 (+) True CI01000340_07692812_07697115
CI01000340_07698442_07700739.mRNA mRNA downstream 121867 7698442 ~ 7700739 (+) True CI01000340_07698442_07700739
CI01000340_07701724_07717637.mRNA mRNA downstream 124811 7701386 ~ 7717852 (+) True CI01000340_07701724_07717637
CI01000340_07721395_07728614.mRNA mRNA downstream 144820 7721395 ~ 7728752 (+) True CI01000340_07721395_07728614
TU561697 other upstream 875498 6694221 ~ 6700788 (+) False G489634
TU559265 other upstream 2911101 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU559057 other upstream 3174790 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU558935 other upstream 3593741 3973915 ~ 3982545 (+) True G487133
TU558577 other upstream 4644486 2930091 ~ 2931800 (+) True G486806
TU562819 other downstream 1462237 9038812 ~ 9043101 (+) True G490645
TU563018 other downstream 1548609 9125184 ~ 9131397 (+) True G490826
TU563038 other downstream 1658398 9234973 ~ 9237559 (+) True G490839
TU563102 other downstream 2254898 9831473 ~ 9845052 (+) True G490896
TU564577 other downstream 3075108 10651683 ~ 10652694 (+) True G492194

Expression Profile