RNA id: TCONS_00022106


Basic Information

Item Value
RNA id TCONS_00022106
length 1068
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_010436
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 7508101 ~ 7621115 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGTGCTTGCCTGCAGCATTGCACAAGTGGATGTCGTCCAACTTGAAGATTGCACAAagAGCAACTGAGGGCCATATCAGATTGGAGACGCAGCCCACCGCAGGTCAGGATAACAGGGCTCCTACACTGCTTTCCATTTCCCACATCAGTTAAGAGATTTCCTTCCCTACCTGTTGCCTTCTCTCTCTTCCTCCCTCCCAAACGTGGTTCTGGGTGGTCTGGGCTCCTCATTCTTGGCAGTGACTTTTCTGGGGGTAGTTACAGGACTTCCTCTTCTGCCTCTGAGCTTCCTGTGGCATTACGCTTCAAAAGGCCTCACAACACCCACACACGAGATGCACACGAGGGATGTTTCTTCCGTCGACGTTTGGGGTTAACCGCTACTCCTCAGTGCAGCAGTCCCCTGCGAATCTGTAGGCCGCCGTTCCAACCCTGTACACACACTGGCCACAGGACGATCGGGAACCAAACACACATGCATCCTTtgcatctacactgtaaaaaaaaaaaaataattaatgcagggttccacacaacctTCATGTCATCCCAACACGAATGGATTAAGTTAATTGAgtggtttttacaattttaagttgatttaacatAAATTAATTGAGTTgttctaaaaaacaacaacaagaattgtgttgttttagctcttttttaataagtagtttaatatttttgcagtgtacactgtgaaatatgctgggttccacataagtgatttgtgttggggcaacatgaaggaattaagtgaatttattaggttttacaagTGTAAGTGGAATGAGCATAAAATAACTAAGTTGTCccaaatgaaatctcaagaattgtgttgttttagctcattttaaatatgtagttaaaaaaagcagcaatttttgaatgaaatgctaatgttcatacaatttttaatttttagatcCCATAAGCATTGCAACAAGACTTAAAATGTCATTGATTGTCAGTGAAGGTTAGCCCACatgaaataatttaaacaacaaatgattttttttagcccatcatttaaTCTATTTATATGATTATGTAAAGTTGtgtac

Function

GO:

id name namespace
GO:1905879 regulation of oogenesis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022104 lncRNA downstream 336592 7202095 ~ 7214679 (-) False XLOC_010432
TCONS_00022103 lncRNA downstream 899552 6648030 ~ 6651719 (-) True XLOC_010428
TCONS_00022102 lncRNA downstream 915975 6625848 ~ 6635296 (-) False XLOC_010427
TCONS_00020488 lncRNA downstream 915975 6634106 ~ 6635296 (-) True XLOC_010427
TCONS_00022101 lncRNA downstream 916292 6620949 ~ 6634979 (-) False XLOC_010427
TCONS_00022111 lncRNA upstream 17819 7572119 ~ 7621115 (-) False XLOC_010436
TCONS_00022112 lncRNA upstream 44073 7598373 ~ 7621105 (-) False XLOC_010436
TCONS_00022113 lncRNA upstream 44506 7598806 ~ 7621105 (-) True XLOC_010436
TCONS_00022114 lncRNA upstream 279919 7834219 ~ 7881277 (-) False XLOC_010441
TCONS_00020513 lncRNA upstream 302200 7856500 ~ 7881252 (-) True XLOC_010441
TCONS_00020503 mRNA downstream 107883 7430998 ~ 7443388 (-) True XLOC_010435
TCONS_00020502 mRNA downstream 171943 7376471 ~ 7379328 (-) True XLOC_010434
TCONS_00020501 mRNA downstream 188465 7315144 ~ 7362806 (-) True XLOC_010433
TCONS_00020499 mRNA downstream 311814 7217448 ~ 7239457 (-) False XLOC_010432
TCONS_00020498 mRNA downstream 322995 7217046 ~ 7228276 (-) False XLOC_010432
TCONS_00020505 mRNA upstream 134068 7688368 ~ 7692568 (-) True XLOC_010437
TCONS_00020508 mRNA upstream 188358 7742658 ~ 7793457 (-) True XLOC_010439
TCONS_00020509 mRNA upstream 248430 7802730 ~ 7828848 (-) False XLOC_010440
TCONS_00020510 mRNA upstream 251164 7805464 ~ 7827365 (-) False XLOC_010440
TCONS_00020511 mRNA upstream 251164 7805464 ~ 7827517 (-) False XLOC_010440
TCONS_00020500 other downstream 322992 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020493 other downstream 721636 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020473 other downstream 1680582 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 1693290 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 2443854 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020506 other upstream 139581 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 140494 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 733471 8287771 ~ 8288447 (-) True XLOC_010447
TCONS_00020525 other upstream 817965 8372265 ~ 8395559 (-) True XLOC_010449
TCONS_00020526 other upstream 924580 8478880 ~ 8479009 (-) True XLOC_010450

Expression Profile

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