RNA id: TU563656



Basic Information


Item Value
RNA id TU563656
length 450
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G491363
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7855222 ~ 7855849 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAATTCCCCATAGGTGTTCGATTGGGTTCAGATCAGGAGCCACTGAATCACTTTCACCCTGTTCTTCTTCAGAAATCCAACAGTGGCCTTAGATGTGTGTTTAGGATCATTGTCATGTTGGAAAAGTGTACGACGACCAAGGGCACGGAGTGATGGTAGCATCTTCTCTTTCAGTATAGAGCAGTACATCTGTGAATACATGATGCCATCAATGAAATGCAGCTCCCTGACACCAGCAGCACTCATGCAGCCCCACATAAGGACACTGCCACCACCATGTTTCACTGTAGGCACCATGCATTTTTCTTTGTATTCCTCACCTTTGCGATGCCATACAGTTTTAAAGCCATCAGTTCCAAAAACATTTATCTTGGTCTCATCACTGCAGAGTATAGAGTCCCAGTAGTCTTCATCTTTGTCAGCATGGGCCCTGGCAAACTCTAGGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU563654 lncRNA downstream 198 7854076 ~ 7855024 (-) True G491362
TU563647 lncRNA downstream 14101 7840193 ~ 7841121 (-) True G491355
TU563616 lncRNA downstream 47046 7782920 ~ 7808176 (-) True G491325
TU563627 lncRNA downstream 73651 7780015 ~ 7780063 (-) True G491335
TU563501 lncRNA downstream 121718 7731846 ~ 7733504 (-) True G491216
TU563685 lncRNA upstream 32075 7887924 ~ 7888971 (-) True G491391
TU563686 lncRNA upstream 34404 7890253 ~ 7892742 (-) True G491392
TU563687 lncRNA upstream 36960 7892809 ~ 7894303 (-) True G491393
TU563688 lncRNA upstream 39744 7895593 ~ 7895796 (-) True G491394
TU563691 lncRNA upstream 41067 7896916 ~ 7914183 (-) True G491396
CI01000340_07778322_07787234.mRNA mRNA downstream 67759 7777743 ~ 7787463 (-) False CI01000340_07778322_07787234
CI01000340_07651745_07673195.mRNA mRNA downstream 181551 7650988 ~ 7673671 (-) True CI01000340_07651745_07673195
CI01000340_07546144_07547567.mRNA mRNA downstream 307655 7545679 ~ 7547567 (-) True CI01000340_07546144_07547567
CI01000340_07543307_07544545.mRNA mRNA downstream 310470 7543019 ~ 7544752 (-) True CI01000340_07543307_07544545
CI01000340_07347497_07355645.mRNA mRNA downstream 498372 7346820 ~ 7356850 (-) True CI01000340_07347497_07355645
CI01000340_07994499_07999442.mRNA mRNA upstream 138650 7994499 ~ 7999651 (-) True CI01000340_07994499_07999442
CI01000340_08007878_08016645.mRNA mRNA upstream 151848 8007697 ~ 8017282 (-) True CI01000340_08007878_08016645
CI01000340_08020667_08025048.mRNA mRNA upstream 164606 8020455 ~ 8025048 (-) True CI01000340_08020667_08025048
CI01000340_08029268_08031877.mRNA mRNA upstream 173233 8029082 ~ 8032004 (-) True CI01000340_08029268_08031877
CI01000340_08036162_08043659.mRNA mRNA upstream 179479 8035328 ~ 8044116 (-) False CI01000340_08036162_08043659
TU561564 other downstream 1527850 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1634580 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 2530078 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 3196161 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 3258961 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 943352 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 2166043 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 2501335 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 3817897 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4211328 12067177 ~ 12106251 (-) False G493266

Expression Profile