RNA id: TU563712



Basic Information


Item Value
RNA id TU563712
length 262
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G491417
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7943885 ~ 7944146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATAACATAAGGCATCCTGCTTTAACGTAATGCTTGTGAGGTGAGAAAATTGCATGTCTCATGTCATAACAGTAAATCATCTAGTGAAGGTGAAGTAAAAAAGATAGAAGGTGAGATACCATTTCTTAAAGGATTAGTTCACTTTAAAATGAAAATTACCCCAAGATTTACTCAACCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATGAACACAATCGGAGTTATATTAATAAATATCTTGAAGCATCCAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU563710 lncRNA downstream 2050 7941541 ~ 7941835 (-) True G491415
TU563705 lncRNA downstream 10870 7932794 ~ 7933015 (-) True G491410
TU563697 lncRNA downstream 25686 7917965 ~ 7918199 (-) True G491402
TU563691 lncRNA downstream 29702 7896916 ~ 7914183 (-) True G491396
TU563688 lncRNA downstream 48089 7895593 ~ 7895796 (-) True G491394
TU563728 lncRNA upstream 2228 7946374 ~ 7946634 (-) True G491427
TU563745 lncRNA upstream 94952 8039098 ~ 8039280 (-) True G491444
TU563751 lncRNA upstream 173415 8117561 ~ 8119786 (-) True G491448
TU563783 lncRNA upstream 184756 8128902 ~ 8130505 (-) True G491475
TU563778 lncRNA upstream 241150 8185296 ~ 8185607 (-) True G491471
CI01000340_07778322_07787234.mRNA mRNA downstream 156422 7777743 ~ 7787463 (-) False CI01000340_07778322_07787234
CI01000340_07651745_07673195.mRNA mRNA downstream 270214 7650988 ~ 7673671 (-) True CI01000340_07651745_07673195
CI01000340_07546144_07547567.mRNA mRNA downstream 396318 7545679 ~ 7547567 (-) True CI01000340_07546144_07547567
CI01000340_07543307_07544545.mRNA mRNA downstream 399133 7543019 ~ 7544752 (-) True CI01000340_07543307_07544545
CI01000340_07347497_07355645.mRNA mRNA downstream 587035 7346820 ~ 7356850 (-) True CI01000340_07347497_07355645
CI01000340_07994499_07999442.mRNA mRNA upstream 50353 7994499 ~ 7999651 (-) True CI01000340_07994499_07999442
CI01000340_08007878_08016645.mRNA mRNA upstream 63551 8007697 ~ 8017282 (-) True CI01000340_08007878_08016645
CI01000340_08020667_08025048.mRNA mRNA upstream 76309 8020455 ~ 8025048 (-) True CI01000340_08020667_08025048
CI01000340_08029268_08031877.mRNA mRNA upstream 84936 8029082 ~ 8032004 (-) True CI01000340_08029268_08031877
CI01000340_08036162_08043659.mRNA mRNA upstream 91182 8035328 ~ 8044116 (-) False CI01000340_08036162_08043659
TU561564 other downstream 1616513 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1723243 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 2618741 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 3284824 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 3347624 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 855055 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 2077746 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 2413038 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 3729600 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 4123031 12067177 ~ 12106251 (-) False G493266

Expression Profile