RNA id: TU563751


Basic Information

Item Value
RNA id TU563751
length 1967
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G491448
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8117561 ~ 8119786 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAAAATAGCACATATCACAGACATAAAAATGGCAGCTTATGGATTTTTTTGTTGTTTGTTTATATGGCATATATTGACATGCAGAACAGCAAGTAAAAGATGAATGCTACAGGAGGGAGTTACATATCCTGAAGGTACATACAAGTCCACCAATAATACGGTCAGGAAAAAAGCTATCAAACATATAAGAGTCATTCAGCAGAGAAGTGATTTCATAGCCCAGGTGTTGCAGGATTACATGTGAATTCAGTCTTTTGCTACAGCCGGTTTAAGGTTCTGCACCTCAAAATGCAATTGCCACGAAGCCCATGAGGCTCATTTTCTAGCCAAAACTCCACATAAATAGTGCAATTCTCCTCAATTCACATTTAGGTTCTGAACTAGATTCTGCTGAAGTTGTCTGGTGATGCGTTTCCTCGCACAGCTCACACAGCCCTGTTAAAAGCAAACGACGGACAGACTCAAGTGCAGACAACTGAGGCAGCTGTAAAGGTTATTTCATGGAAAGAGTGCAAGGTTAGTTTATTATGAAGTTCAATATAAATTGGAATGAATGATAACTTATTTCAAACATCTGCAAGTTAGTTATTAACTAAATGCTTGGACTTTAGACATTTATTCATTAACAAGAATTCATTTCTAGACACGGAGGATAGAAGGAATGCACGTTCGCGGTTGATGGCACGGGGCCATCCGTATACTGTATGAACAGACAGCTGGGTCAACATCATGCCGAACATTACAGATTCCTAATTTCAGAATCGCCGACTGCCATATAGCAACTCATACATAATGTAAAGATCCACGTACAAGAACATTCTAACGTGAGGAGGCGCAAAATGAACGCCACACACGTGAACTCTTTGATTCTTATATGAAGTCTCCTTGATGATTACATCATCCCTCGTCGCATAAATTCTGTCTGAGAGTGTGCAAGTGGTTAATATTCTAATATAATACAGCAATACATGCAAGGACTGCAGCTCAGCTGCAGCTAAAGTGCATGGCTCATACACTCTGGTTGCATCCAGCTGTTAAAAATGAAAAAAGTCCCACGTCTGTGCAGATCAACATTCATATTAACAACAACCAGCATGTAAACCTGGCTTTCATACAACCAAGATATTGCAGAAAATGTAAACTCCAACTGACTAAAGTTGAGTATTACAAGGTTCCCATATGCAGTCATGAGATAAACATGCACTCATGTCAAACAATGTATGGCCTGCAGTATTTACAAACATTATGATCTGCTCACTCATTTGCATGATGGTAGAGGTGAGCATTTTAATGCAAAAAAAAAGATCATCTAATGTAATACTGGCTTTTTATATTCTTTTTCCTCCTACAAGTCACATTTTCATGAGGAGACAATGAATCACAAAGTCAGCCATATCATCAATTACGCCACCTCCATTCTGGTAAATACATCCCGAGCGCAAACCCTCCTGCTCTCCATCTTTCTGTTTCTTTGATTTTTCAGACCCACTGCATGAAATCTTTGGAGGGGTCATGAATGGTCAGATGGAGTTATGTGCAAGAAAAGTTAAGGTATGAAGCACAGGGAGGCGTGATTTAAGGTTTGGGGGCGGGGTCAAGCGTGGTCCTCGATGGGGAAAACTAAACGTGTGCCACGGCTCAAAAGCTCATGTTCACGTGTATCCAGTTCTCGTTCCAGAGCGTCTTCCGATGTGCTGTCGCTGCGTTTGCCGTTCAAGCCCCAGCTCCCGGCTGATCCTTCGGGGCCGGAGGAGGACGAGGCTCCGTTGGCCGTGATGGCCGTGTCGCCGTAGGTCAGTGTCAGGTCTCCTTCGTTCAGGATGAGGTCTGAGTCACTGTCTCGCAGTGGCTCGTGGTTCTGTGGAGCACAGTGACAAGTCGGACATGAAGGGAGGAGGACGGTGCACACACACTCACACACACTATTCAAGCGCAACACAAAGGTTCATGAGGGACACTGTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563745 lncRNA downstream 73105 8039098 ~ 8039280 (-) True G491444
TU563728 lncRNA downstream 170927 7946374 ~ 7946634 (-) True G491427
TU563712 lncRNA downstream 173415 7943885 ~ 7944146 (-) True G491417
TU563710 lncRNA downstream 175726 7941541 ~ 7941835 (-) True G491415
TU563705 lncRNA downstream 184546 7932794 ~ 7933015 (-) True G491410
TU563783 lncRNA upstream 9116 8128902 ~ 8130505 (-) True G491475
TU563778 lncRNA upstream 65510 8185296 ~ 8185607 (-) True G491471
TU563882 lncRNA upstream 312825 8432611 ~ 8435645 (-) True G491565
TU564015 lncRNA upstream 549827 8669613 ~ 8669929 (-) True G491687
TU563986 lncRNA upstream 683929 8803715 ~ 8806687 (-) True G491658
CI01000340_08067248_08072622.mRNA mRNA downstream 44647 8066024 ~ 8072914 (-) True CI01000340_08067248_08072622
CI01000340_08050696_08058355.mRNA mRNA downstream 59206 8050274 ~ 8058355 (-) True CI01000340_08050696_08058355
CI01000340_08036162_08043659.mRNA mRNA downstream 73445 8035328 ~ 8044116 (-) False CI01000340_08036162_08043659
CI01000340_08029268_08031877.mRNA mRNA downstream 85557 8029082 ~ 8032004 (-) True CI01000340_08029268_08031877
CI01000340_08020667_08025048.mRNA mRNA downstream 92513 8020455 ~ 8025048 (-) True CI01000340_08020667_08025048
CI01000340_08125568_08126818.mRNA mRNA upstream 5306 8125092 ~ 8126818 (-) True CI01000340_08125568_08126818
CI01000340_08171358_08172020.mRNA mRNA upstream 51427 8171213 ~ 8172244 (-) True CI01000340_08171358_08172020
CI01000340_08187529_08192962.mRNA mRNA upstream 67377 8187163 ~ 8193114 (-) True CI01000340_08187529_08192962
CI01000340_08195799_08197646.mRNA mRNA upstream 75671 8195457 ~ 8197646 (-) True CI01000340_08195799_08197646
CI01000340_08327142_08338311.mRNA mRNA upstream 207166 8326952 ~ 8338448 (-) True CI01000340_08327142_08338311
TU561564 other downstream 1790189 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1896919 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 2792417 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 3458500 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 3521300 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 679415 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 1902106 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 2237398 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 3553960 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 3947391 12067177 ~ 12106251 (-) False G493266

Expression Profile