RNA id: TU563778


Basic Information

Item Value
RNA id TU563778
length 312
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G491471
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8185296 ~ 8185607 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCATTGCTGACAGCATGAAATGGGAAGGGGTTTTAACACCCTTTTATAGTCAACTGTGTGCTGGACACCTGTGTAATGAATAATTAGACTCACCTGTGGTTGAATTCTTGTTAAATTAGACATTTGTAGTCTAAAATTTAGCTCTGCTCCAGAGACTTTCAGTGGGGTGTACTCATTTTTGCATCACCCTAATTTGAGTAAAACTGAAAATTTTGTTCTCTGAGTTATATTATTAACCTTACTTTCATGTTATAAGTTAAACAGATGTTATATAAAACATAGTCTTGTCAACATTTTGGAAATTGTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563783 lncRNA downstream 54791 8128902 ~ 8130505 (-) True G491475
TU563751 lncRNA downstream 65510 8117561 ~ 8119786 (-) True G491448
TU563745 lncRNA downstream 140840 8039098 ~ 8039280 (-) True G491444
TU563728 lncRNA downstream 238662 7946374 ~ 7946634 (-) True G491427
TU563712 lncRNA downstream 241150 7943885 ~ 7944146 (-) True G491417
TU563882 lncRNA upstream 247004 8432611 ~ 8435645 (-) True G491565
TU564015 lncRNA upstream 484006 8669613 ~ 8669929 (-) True G491687
TU563986 lncRNA upstream 618108 8803715 ~ 8806687 (-) True G491658
TU564054 lncRNA upstream 694786 8880393 ~ 8880664 (-) True G491724
TU564055 lncRNA upstream 696986 8882593 ~ 8883395 (-) True G491725
CI01000340_08171358_08172020.mRNA mRNA downstream 13052 8171213 ~ 8172244 (-) True CI01000340_08171358_08172020
CI01000340_08125568_08126818.mRNA mRNA downstream 58478 8125092 ~ 8126818 (-) True CI01000340_08125568_08126818
CI01000340_08067248_08072622.mRNA mRNA downstream 112382 8066024 ~ 8072914 (-) True CI01000340_08067248_08072622
CI01000340_08050696_08058355.mRNA mRNA downstream 126941 8050274 ~ 8058355 (-) True CI01000340_08050696_08058355
CI01000340_08036162_08043659.mRNA mRNA downstream 141180 8035328 ~ 8044116 (-) False CI01000340_08036162_08043659
CI01000340_08187529_08192962.mRNA mRNA upstream 1556 8187163 ~ 8193114 (-) True CI01000340_08187529_08192962
CI01000340_08195799_08197646.mRNA mRNA upstream 9850 8195457 ~ 8197646 (-) True CI01000340_08195799_08197646
CI01000340_08327142_08338311.mRNA mRNA upstream 141345 8326952 ~ 8338448 (-) True CI01000340_08327142_08338311
CI01000340_08374101_08387155.mRNA mRNA upstream 188472 8374079 ~ 8387549 (-) True CI01000340_08374101_08387155
CI01000340_08502336_08507603.mRNA mRNA upstream 316638 8502245 ~ 8509133 (-) True CI01000340_08502336_08507603
TU561564 other downstream 1857924 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 1964654 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 2860152 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 3526235 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 3589035 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 613594 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 1836285 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 2171577 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 3488139 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 3881570 12067177 ~ 12106251 (-) False G493266

Expression Profile