RNA id: TU564015


Basic Information

Item Value
RNA id TU564015
length 294
lncRNA type intronic
GC content 0.41
exon number 2
gene id G491687
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8669613 ~ 8669929 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTCCCTTCGCCTCTCTATTAATGTGCTTGGACACAGAGCTCTGTGAACAGCCAACCTCTTTTGCAATGACCTTTTGTGTCAATGGTCGTCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTAGAGTGTGGCACCAGGTGACTTCAATATTGAACCTTTTCACAATATTCTAATTTTCTGAGATACTGAATTTGGGATTTTCCTTAGTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563882 lncRNA downstream 233968 8432611 ~ 8435645 (-) True G491565
TU563778 lncRNA downstream 484006 8185296 ~ 8185607 (-) True G491471
TU563783 lncRNA downstream 539108 8128902 ~ 8130505 (-) True G491475
TU563751 lncRNA downstream 549827 8117561 ~ 8119786 (-) True G491448
TU563745 lncRNA downstream 625157 8039098 ~ 8039280 (-) True G491444
TU563986 lncRNA upstream 133786 8803715 ~ 8806687 (-) True G491658
TU564054 lncRNA upstream 210464 8880393 ~ 8880664 (-) True G491724
TU564055 lncRNA upstream 212664 8882593 ~ 8883395 (-) True G491725
TU564056 lncRNA upstream 213899 8883828 ~ 8884263 (-) True G491726
TU564096 lncRNA upstream 367422 9037351 ~ 9037613 (-) True G491764
CI01000340_08513697_08528196.mRNA mRNA downstream 140971 8513494 ~ 8528642 (-) True CI01000340_08513697_08528196
CI01000340_08502336_08507603.mRNA mRNA downstream 160480 8502245 ~ 8509133 (-) True CI01000340_08502336_08507603
CI01000340_08374101_08387155.mRNA mRNA downstream 282064 8374079 ~ 8387549 (-) True CI01000340_08374101_08387155
CI01000340_08327142_08338311.mRNA mRNA downstream 331165 8326952 ~ 8338448 (-) True CI01000340_08327142_08338311
CI01000340_08195799_08197646.mRNA mRNA downstream 471967 8195457 ~ 8197646 (-) True CI01000340_08195799_08197646
CI01000340_08722460_08728762.mRNA mRNA upstream 51723 8721652 ~ 8730006 (-) True CI01000340_08722460_08728762
CI01000340_08780601_08789689.mRNA mRNA upstream 110672 8780601 ~ 8789794 (-) True CI01000340_08780601_08789689
CI01000340_08808101_08822062.mRNA mRNA upstream 137020 8806949 ~ 8822062 (-) True CI01000340_08808101_08822062
CI01000340_08864647_08868868.mRNA mRNA upstream 194409 8864338 ~ 8868868 (-) True CI01000340_08864647_08868868
CI01000340_08875220_08879004.mRNA mRNA upstream 205236 8875165 ~ 8879053 (-) True CI01000340_08875220_08879004
TU561564 other downstream 2342241 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 2448971 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 3344469 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 4010552 4658632 ~ 4659061 (-) True G488887
TU560860 other downstream 4073352 4507196 ~ 4518120 (-) True G488862
TU564040 other upstream 129272 8799201 ~ 8799577 (-) True G491712
TU564232 other upstream 1351963 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 1687255 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 3003817 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 3397248 12067177 ~ 12106251 (-) False G493266

Expression Profile