RNA id: TU564054


Basic Information

Item Value
RNA id TU564054
length 272
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G491724
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8880393 ~ 8880664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAGTTAAAATTTGGTGATTTGAGGACAATTCTCTCATACTGATCACTGGATGTTCAACATGGCACCTCATGGCAAAGAACTCTCTGAGGATTTGAGAATTAGAATTGTTGCTCTCCACAAAGATGGCCTAGGCTATAAGAAGATCGGTAACACCCTGAAACTGAGTTACAGTACAGTGGCCAGGGTCATAGAGAGAGGTTTTCCAAGACGGGTTCCACTCGGAACAGGCCATAGAAGTTGAATCAAAGAAGCTGAGACCTTGTGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563986 lncRNA downstream 73706 8803715 ~ 8806687 (-) True G491658
TU564015 lncRNA downstream 210464 8669613 ~ 8669929 (-) True G491687
TU563882 lncRNA downstream 444748 8432611 ~ 8435645 (-) True G491565
TU563778 lncRNA downstream 694786 8185296 ~ 8185607 (-) True G491471
TU563783 lncRNA downstream 749888 8128902 ~ 8130505 (-) True G491475
TU564055 lncRNA upstream 1929 8882593 ~ 8883395 (-) True G491725
TU564056 lncRNA upstream 3164 8883828 ~ 8884263 (-) True G491726
TU564096 lncRNA upstream 156687 9037351 ~ 9037613 (-) True G491764
TU563988 lncRNA upstream 252499 9133163 ~ 9138105 (-) True G491660
TU564177 lncRNA upstream 580722 9461386 ~ 9461638 (-) True G491831
CI01000340_08875220_08879004.mRNA mRNA downstream 1340 8875165 ~ 8879053 (-) True CI01000340_08875220_08879004
CI01000340_08864647_08868868.mRNA mRNA downstream 11525 8864338 ~ 8868868 (-) True CI01000340_08864647_08868868
CI01000340_08808101_08822062.mRNA mRNA downstream 58331 8806949 ~ 8822062 (-) True CI01000340_08808101_08822062
CI01000340_08780601_08789689.mRNA mRNA downstream 90599 8780601 ~ 8789794 (-) True CI01000340_08780601_08789689
CI01000340_08722460_08728762.mRNA mRNA downstream 150387 8721652 ~ 8730006 (-) True CI01000340_08722460_08728762
CI01000340_08914198_08926239.mRNA mRNA upstream 32743 8913407 ~ 8926239 (-) True CI01000340_08914198_08926239
CI01000340_08928445_08929680.mRNA mRNA upstream 46925 8927589 ~ 8929680 (-) True CI01000340_08928445_08929680
CI01000340_08943640_08947598.mRNA mRNA upstream 62100 8942764 ~ 8947871 (-) True CI01000340_08943640_08947598
CI01000340_08950990_08963235.mRNA mRNA upstream 68900 8949564 ~ 8963878 (-) True CI01000340_08950990_08963235
CI01000340_08986297_08992859.mRNA mRNA upstream 105108 8985772 ~ 8992859 (-) True CI01000340_08986297_08992859
TU564040 other downstream 80816 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 2553021 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 2659751 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 3555249 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 4221332 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 1141228 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 1476520 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 2793082 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 3186513 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 3228329 12108993 ~ 12116900 (-) True G493266

Expression Profile