RNA id: TU564056


Basic Information

Item Value
RNA id TU564056
length 436
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G491726
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8883828 ~ 8884263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACATTTCAACAAGCATTAGAAGTGAGTGGTGTTAAAGAGGCATAAATGTATACAGGAGTGTTGAGTGTGTGTAAGAGAGTTACTCTGATTGGGTGGAGGTCTTAGGGTAGTAGTTATTGTTGCTGAAGTAGTAGAAGTTCGTGAGGTAGTCGAAGTAGGTGATGTAGTAGAAGTGGTTGAGGTAGTAGAAGTAGGTGATGTAGTAGGAGCAGGTAAGGTTGTAGAAACAGGTTGGCATGTGCTTGTAGGGTTGAAGACGACGAATCCTGGGAGATTCTGGACAATGGTGGTGGTGATCCAACTCTGATACTGTGAAACTCGCGTGTAAACACCAGGTGCGTTGGGATCGGCACAGCCATAACCCCAGCTGGTGATACCAGACTGAACCCACACCAAACATTGCTTGCTCACCATTGGACCTCCAGAGTCACCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564055 lncRNA downstream 433 8882593 ~ 8883395 (-) True G491725
TU564054 lncRNA downstream 3164 8880393 ~ 8880664 (-) True G491724
TU563986 lncRNA downstream 77141 8803715 ~ 8806687 (-) True G491658
TU564015 lncRNA downstream 213899 8669613 ~ 8669929 (-) True G491687
TU563882 lncRNA downstream 448183 8432611 ~ 8435645 (-) True G491565
TU564096 lncRNA upstream 153088 9037351 ~ 9037613 (-) True G491764
TU563988 lncRNA upstream 248900 9133163 ~ 9138105 (-) True G491660
TU564177 lncRNA upstream 577123 9461386 ~ 9461638 (-) True G491831
TU564215 lncRNA upstream 675052 9559315 ~ 9559524 (-) True G491869
TU564230 lncRNA upstream 700598 9584861 ~ 9699676 (-) True G491882
CI01000340_08875220_08879004.mRNA mRNA downstream 4775 8875165 ~ 8879053 (-) True CI01000340_08875220_08879004
CI01000340_08864647_08868868.mRNA mRNA downstream 14960 8864338 ~ 8868868 (-) True CI01000340_08864647_08868868
CI01000340_08808101_08822062.mRNA mRNA downstream 61766 8806949 ~ 8822062 (-) True CI01000340_08808101_08822062
CI01000340_08780601_08789689.mRNA mRNA downstream 94034 8780601 ~ 8789794 (-) True CI01000340_08780601_08789689
CI01000340_08722460_08728762.mRNA mRNA downstream 153822 8721652 ~ 8730006 (-) True CI01000340_08722460_08728762
CI01000340_08914198_08926239.mRNA mRNA upstream 29144 8913407 ~ 8926239 (-) True CI01000340_08914198_08926239
CI01000340_08928445_08929680.mRNA mRNA upstream 43326 8927589 ~ 8929680 (-) True CI01000340_08928445_08929680
CI01000340_08943640_08947598.mRNA mRNA upstream 58501 8942764 ~ 8947871 (-) True CI01000340_08943640_08947598
CI01000340_08950990_08963235.mRNA mRNA upstream 65301 8949564 ~ 8963878 (-) True CI01000340_08950990_08963235
CI01000340_08986297_08992859.mRNA mRNA upstream 101509 8985772 ~ 8992859 (-) True CI01000340_08986297_08992859
TU564040 other downstream 84251 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 2556456 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 2663186 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 3558684 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 4224767 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 1137629 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 1472921 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 2789483 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 3182914 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 3224730 12108993 ~ 12116900 (-) True G493266

Expression Profile