RNA id: TU564221


Basic Information

Item Value
RNA id TU564221
length 773
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G491875
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9605977 ~ 9607644 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCAAGCATGTTTTAGAAATGTCACACCCCTTACCATAATCACGTTAGATCCAGGGTGGAAAAAACAACATCTCTTAGATATGGCGACAACACACTACTAAGGTAACTCAACCAGGCCTTGCCCCTTTTTTTGCATATTCCTTGGGTGGGAATTATTTAAATGAGGAATATTGTGACGTGTACATTGCCGGAAGAAAACTCAAGACTACAATCTAGGTGTTTCAGTGAGTCTAGAAACAGTGCTCACTAATACGGAGTGCTTTGTAACTTTGGAGACCTTTTTTCATGCTCAAAAAGCAACATTACACACTAAAGAGCATAAATAGGTCCTCTTTAACAAAGAAAAGTATCAGACACAAGGCTAAGAAAGGAAATTCAGGGAGATGGATCAAAAAACAACACTTTAAAGGATGGAAAGATGAGTCCTTGCCTTTTTATGTGTACTTGAGCGCTGTGTGTCCTTGTGATTGGAATTGAGGGATTTCCAGACAGTGGTTTTAGACATTTCATCAGATATGTTAATATCAGAGGGATCGGTCTGGGGTCTGGGGTTCTAGGTGAGTGTAGAGGTTTGCTCTCCAATGGGATCTGCACTGTGTCTTTGTCTTCTGATTTCTCAGAGTCATCCACCAGCATCTCCTGTGATTCCTGCTCTACTGCCTTTTTGGAATCATCATCCAGCTTCTTCTTCTTACTCTCAGGCATCAGATCATCAAGGTAACTCAGCTCCCGATTGGAAAAACAGAAGTCCAGCAGCTTACGGATGAACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564287 lncRNA downstream 7876 9597631 ~ 9598101 (-) True G491933
TU564215 lncRNA downstream 46453 9559315 ~ 9559524 (-) True G491869
TU564177 lncRNA downstream 144339 9461386 ~ 9461638 (-) True G491831
TU563988 lncRNA downstream 467872 9133163 ~ 9138105 (-) True G491660
TU564096 lncRNA downstream 568364 9037351 ~ 9037613 (-) True G491764
TU564293 lncRNA upstream 17240 9624884 ~ 9625228 (-) True G491938
TU564303 lncRNA upstream 83964 9691608 ~ 9693371 (-) True G491946
TU564334 lncRNA upstream 157791 9765435 ~ 9766574 (-) True G491970
TU564342 lncRNA upstream 247262 9854906 ~ 9855304 (-) True G491978
TU564344 lncRNA upstream 250627 9858271 ~ 9858545 (-) True G491980
CI01000340_09569243_09577176.mRNA mRNA downstream 28801 9568227 ~ 9577176 (-) True CI01000340_09569243_09577176
CI01000340_09499658_09526119.mRNA mRNA downstream 79858 9499257 ~ 9526119 (-) True CI01000340_09499658_09526119
CI01000340_09489742_09491331.mRNA mRNA downstream 114437 9487214 ~ 9491540 (-) True CI01000340_09489742_09491331
CI01000340_09439272_09443734.mRNA mRNA downstream 162243 9438381 ~ 9443734 (-) True CI01000340_09439272_09443734
CI01000340_09428701_09432767.mRNA mRNA downstream 173210 9427666 ~ 9432767 (-) True CI01000340_09428701_09432767
CI01000340_09621058_09623347.mRNA mRNA upstream 13371 9621015 ~ 9623366 (-) True CI01000340_09621058_09623347
CI01000340_09623654_09628766.mRNA mRNA upstream 15876 9623520 ~ 9628766 (-) True CI01000340_09623654_09628766
CI01000340_09632037_09635287.mRNA mRNA upstream 23831 9631475 ~ 9635580 (-) True CI01000340_09632037_09635287
CI01000340_09637047_09638688.mRNA mRNA upstream 29050 9636694 ~ 9638688 (-) True CI01000340_09637047_09638688
CI01000340_09640461_09646025.mRNA mRNA upstream 32172 9639816 ~ 9646025 (-) True CI01000340_09640461_09646025
TU564040 other downstream 806400 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 3278605 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 3385335 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 4280833 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 4946916 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 414248 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 749540 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 2066102 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 2459533 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 2501349 12108993 ~ 12116900 (-) True G493266

Expression Profile