RNA id: TU564303


Basic Information

Item Value
RNA id TU564303
length 1031
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G491946
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9691608 ~ 9693371 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAATTGTATTACATTTTATTTTATCCAAGTATTTATCCTTACCGTTCACTGACTCTGCAGACGTCCTTTAGGTTGGAGAACAGAACATGATGCTGCACACGGGAGAGGGTCTGTTTGAGTTCTGCTGAGCACTGAAACACATTCAGTGCTACTACCAGACTCTTCTGATACGAAGCCTCTGACACAATCAGCTCAAATATGGCCTCCTGAAGCTGGATCTCCTGCGCACTGAGGGAGTTCAGCAGACCCTTTACTTGTGGTAACTCCTGCCATAGAGCGTATGGCTTAGCCTGTAGTCCTGGTGGGCTCAACACAGAGGTCGGGCTTAAAGGAGGAGGAGTTTTCAGACCGGGAAGACGCATAGATGTCACCAATTCTGAAAGTCCTGTGTGCTGTGCTCTGTGTAAATCCTTCTTCACAGAGTTCATCCAATACTCCTGATATAAAGGGACCGAACTGTTGATGTACTCTGATTCAAACTTTGCAACGTACGTTTCCTCTTGTTGTGCATCGACTTCCATTGCATCTTCCCTTTTCATCTCATTCTCAAAGCAAAGCATGTCAGATGATTTCAGACTGAAGCTCTCAGAAGAAAAGAGGGATGAAATGGGCAAAGAAAACCCCATAAAATTCCATAACTGTGAGCTTGCAACAGATCGAAGAGCTTCAGCCAACCCTTCAGATGCATTGTAAAGTCCTCCAGACGCTTCACAGTCTTCCACGTTTGTTTTAGGGCTGTGTTCATCTAACGTTAGCCCGGGACGAGCATCTAGTGCTTCAGTTACACCATCTCTGTCGGCCCAGATTCTCCCATCCTCCATGACGTGAGCCCTATACGCTAATCTCTCTCGCGGTTTTATGCGTGGTATTGAATTTAAACTTTGAATTATCGCCGTAAAAATACCTTTTTACACGCAGATACTAATACGCCACCAAAATACTTTCCAAACCACTGGATTAAGATCTGTGTGAGTCAGACTAATTTAGCCGAGCGTCCTCACCTGTCCAATTTCTCACAACCAATTTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564293 lncRNA downstream 66380 9624884 ~ 9625228 (-) True G491938
TU564221 lncRNA downstream 83964 9605977 ~ 9607644 (-) True G491875
TU564287 lncRNA downstream 93507 9597631 ~ 9598101 (-) True G491933
TU564215 lncRNA downstream 132084 9559315 ~ 9559524 (-) True G491869
TU564177 lncRNA downstream 229970 9461386 ~ 9461638 (-) True G491831
TU564334 lncRNA upstream 72064 9765435 ~ 9766574 (-) True G491970
TU564342 lncRNA upstream 161535 9854906 ~ 9855304 (-) True G491978
TU564344 lncRNA upstream 164900 9858271 ~ 9858545 (-) True G491980
TU564347 lncRNA upstream 173678 9867049 ~ 9867353 (-) True G491983
TU564240 lncRNA upstream 202391 9895762 ~ 9896892 (-) True G491890
CI01000340_09640461_09646025.mRNA mRNA downstream 45583 9639816 ~ 9646025 (-) True CI01000340_09640461_09646025
CI01000340_09637047_09638688.mRNA mRNA downstream 52920 9636694 ~ 9638688 (-) True CI01000340_09637047_09638688
CI01000340_09632037_09635287.mRNA mRNA downstream 56028 9631475 ~ 9635580 (-) True CI01000340_09632037_09635287
CI01000340_09623654_09628766.mRNA mRNA downstream 62842 9623520 ~ 9628766 (-) True CI01000340_09623654_09628766
CI01000340_09621058_09623347.mRNA mRNA downstream 68242 9621015 ~ 9623366 (-) True CI01000340_09621058_09623347
CI01000340_09702982_09703952.mRNA mRNA upstream 9598 9702969 ~ 9704760 (-) True CI01000340_09702982_09703952
CI01000340_09744311_09747075.mRNA mRNA upstream 50201 9743572 ~ 9747307 (-) True CI01000340_09744311_09747075
CI01000340_09772435_09775402.mRNA mRNA upstream 78867 9772238 ~ 9775402 (-) True CI01000340_09772435_09775402
CI01000340_09779573_09780250.mRNA mRNA upstream 85908 9779279 ~ 9782052 (-) True CI01000340_09779573_09780250
CI01000340_09785598_09788215.mRNA mRNA upstream 92179 9785550 ~ 9788301 (-) True CI01000340_09785598_09788215
TU564040 other downstream 892031 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 3364236 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 3470966 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 4366464 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 5032547 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 328521 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 663813 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 1980375 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 2373806 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 2415622 12108993 ~ 12116900 (-) True G493266

Expression Profile