RNA id: TU564347


Basic Information

Item Value
RNA id TU564347
length 305
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G491983
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9867049 ~ 9867353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACAGAAATGCAAATGTTGCTGTGCGGTTAAAAAAGTTATTCCAAGTTTATCCAGCGTGTTTTCCCCAAGTGTTGTTTTCTTGAATATCTTAAATATAAGCCTAAATGATTAAGTACAGCTATGACAGCGTGAACGTAAATGACTATATAATATTAGCCTAAGTCAGGAGTTCGCGTGTCTGACGCGTGTGACTTGAGCTGTTTGAGAGTCACTGGCAGCGGTGTGACACCTCCCCGCTTTCAAGGGGATGCGCGCGAGCGATGCCCTCAAAGATAAAAATCTCGCGCGTGCAAATACCACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564344 lncRNA downstream 8504 9858271 ~ 9858545 (-) True G491980
TU564342 lncRNA downstream 11745 9854906 ~ 9855304 (-) True G491978
TU564334 lncRNA downstream 100475 9765435 ~ 9766574 (-) True G491970
TU564303 lncRNA downstream 173678 9691608 ~ 9693371 (-) True G491946
TU564293 lncRNA downstream 241821 9624884 ~ 9625228 (-) True G491938
TU564240 lncRNA upstream 28409 9895762 ~ 9896892 (-) True G491890
TU564356 lncRNA upstream 90793 9958146 ~ 9958381 (-) True G491992
TU564357 lncRNA upstream 92391 9959744 ~ 9960010 (-) True G491993
TU564266 lncRNA upstream 164967 10032320 ~ 10034890 (-) True G491915
TU564366 lncRNA upstream 198176 10065529 ~ 10067185 (-) True G492001
CI01000340_09847205_09851609.mRNA mRNA downstream 15087 9846802 ~ 9851962 (-) True CI01000340_09847205_09851609
CI01000340_09833384_09843244.mRNA mRNA downstream 23424 9833303 ~ 9843625 (-) True CI01000340_09833384_09843244
CI01000340_09817874_09828387.mRNA mRNA downstream 38061 9817794 ~ 9828988 (-) True CI01000340_09817874_09828387
CI01000340_09811189_09815649.mRNA mRNA downstream 51400 9810571 ~ 9815649 (-) True CI01000340_09811189_09815649
CI01000340_09794255_09797190.mRNA mRNA downstream 69360 9793937 ~ 9797689 (-) True CI01000340_09794255_09797190
CI01000340_09882272_09889768.mRNA mRNA upstream 14750 9882103 ~ 9889768 (-) True CI01000340_09882272_09889768
CI01000340_09898618_09904814.mRNA mRNA upstream 31265 9898618 ~ 9904814 (-) False CI01000340_09898618_09904814
CI01000340_09907511_09910003.mRNA mRNA upstream 40158 9907511 ~ 9910003 (-) True CI01000340_09907511_09910003
CI01000340_09911298_09920295.mRNA mRNA upstream 43926 9911279 ~ 9920295 (-) True CI01000340_09911298_09920295
CI01000340_09922690_09932467.mRNA mRNA upstream 55036 9922389 ~ 9932982 (-) True CI01000340_09922690_09932467
TU564040 other downstream 1067472 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 3539677 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 3646407 6183290 ~ 6220642 (-) True G489516
TU561021 other downstream 4541905 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU560885 other downstream 5207988 4658632 ~ 4659061 (-) True G488887
TU564232 other upstream 154539 10021892 ~ 10027983 (-) True G491883
TU564413 other upstream 489831 10360197 ~ 10362404 (-) True G492045
TU565620 other upstream 1806393 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 2199824 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 2241640 12108993 ~ 12116900 (-) True G493266

Expression Profile