RNA id: TU564510


Basic Information

Item Value
RNA id TU564510
length 426
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G492136
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10476141 ~ 10476566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACCTGCAACCAAAGCCACCGGCACCGCGAGCAGCAGGGAAATTATGCGGTAAAACCAGAGTCTGGACACCTCAAACAGAGCATGACTCCACAGCCACACCTTATCAAAGCTGTTCACTGATGCAGGCTCCGCTATCACATCTTCAAAGGTCACCTGAGTAGACGGACAGATCATGTAGGAAACTATTTTGGTCTGCTGTAACTTTAGACCCATTACTCATCCCAAACGTCTTACTGATAACAGATTACTTTGAGTAAAGTAGAGTCTGTGTGAATATGTCTTTGAAAGTCCTGCAATACCATTGTTTAACATAAGAGGGCAGTGTAGCATTACAAACGTATTAGCACCCACTATTGGTGTTGAGATCAACCATTCAGATGTAAGAACAGCGATACTGAAATAGGCTACATTCAGGTAAGGGTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564470 lncRNA upstream 5217 10468200 ~ 10470924 (+) True G492101
TU563384 lncRNA upstream 356935 10116156 ~ 10119206 (+) True G491108
TU563121 lncRNA upstream 443816 10029238 ~ 10032325 (+) True G490915
TU563081 lncRNA upstream 448020 10021887 ~ 10028121 (+) True G490875
TU563086 lncRNA upstream 455906 10008303 ~ 10020235 (+) True G490880
TU564511 lncRNA downstream 891 10477457 ~ 10477664 (+) True G492137
TU564513 lncRNA downstream 2024 10478590 ~ 10478848 (+) True G492139
TU564516 lncRNA downstream 5723 10482289 ~ 10482510 (+) True G492142
TU564517 lncRNA downstream 6072 10482638 ~ 10482969 (+) True G492143
TU564518 lncRNA downstream 6420 10482986 ~ 10483297 (+) True G492144
CI01000340_10455853_10465771.mRNA mRNA upstream 9618 10455299 ~ 10466523 (+) True CI01000340_10455853_10465771
CI01000340_10388851_10395247.mRNA mRNA upstream 80874 10388629 ~ 10395267 (+) True CI01000340_10388851_10395247
CI01000340_10296583_10355505.mRNA mRNA upstream 120041 10296583 ~ 10356100 (+) True CI01000340_10296583_10355505
CI01000340_10252718_10253859.mRNA mRNA upstream 221688 10252718 ~ 10254453 (+) True CI01000340_10252718_10253859
CI01000340_10227896_10249819.mRNA mRNA upstream 225373 10227896 ~ 10250768 (+) True CI01000340_10227896_10249819
CI01000340_10644426_10645811.mRNA mRNA downstream 167860 10644426 ~ 10645850 (+) True CI01000340_10644426_10645811
CI01000340_10731548_10747121.mRNA mRNA downstream 254107 10730673 ~ 10747648 (+) True CI01000340_10731548_10747121
CI01000340_10781781_10785861.mRNA mRNA downstream 304902 10781468 ~ 10786351 (+) False CI01000340_10781781_10785861
CI01000340_10790372_10803993.mRNA mRNA downstream 313806 10790372 ~ 10804399 (+) True CI01000340_10790372_10803993
CI01000340_10869243_10869956.mRNA mRNA downstream 391671 10868237 ~ 10870398 (+) True CI01000340_10869243_10869956
TU563102 other upstream 631089 9831473 ~ 9845052 (+) True G490896
TU563038 other upstream 1238582 9234973 ~ 9237559 (+) True G490839
TU563018 other upstream 1344744 9125184 ~ 9131397 (+) True G490826
TU562819 other upstream 1433040 9038812 ~ 9043101 (+) True G490645
TU561697 other upstream 3775353 6694221 ~ 6700788 (+) False G489634
TU564577 other downstream 175117 10651683 ~ 10652694 (+) True G492194
TU564649 other downstream 306836 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other downstream 307090 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU565316 other downstream 1132540 11609106 ~ 11696961 (+) True G492847
TU566211 other downstream 2578826 13055392 ~ 13069652 (+) True G493617

Expression Profile