RNA id: TU564513


Basic Information

Item Value
RNA id TU564513
length 259
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G492139
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10478590 ~ 10478848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAACAAATGAAGGGAGGTGCACAGAAAAAAAGAGTGAAGGACAGGGGAAATGAAAGGGCACTGCCTACGAAATGAGGAGTGCTGTGTCCTTGTTGTGCTGGGCCTGGGAGTGAAAGAAGCGTCTATGTTGAGTAGTAAAGGTCAGGCCATTTGAGGAGGCCTGAAGGTCAATGGTGGTATTGAACCTTGAGGAAAATCTACATGTGCATAATGATAGTTTTGAAGTGGTAGTGAAAAAAGTTTATTCATATGAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564511 lncRNA upstream 926 10477457 ~ 10477664 (+) True G492137
TU564510 lncRNA upstream 2024 10476141 ~ 10476566 (+) True G492136
TU564470 lncRNA upstream 7666 10468200 ~ 10470924 (+) True G492101
TU563384 lncRNA upstream 359384 10116156 ~ 10119206 (+) True G491108
TU563121 lncRNA upstream 446265 10029238 ~ 10032325 (+) True G490915
TU564516 lncRNA downstream 3441 10482289 ~ 10482510 (+) True G492142
TU564517 lncRNA downstream 3790 10482638 ~ 10482969 (+) True G492143
TU564518 lncRNA downstream 4138 10482986 ~ 10483297 (+) True G492144
TU564520 lncRNA downstream 9105 10487953 ~ 10488356 (+) True G492146
TU564521 lncRNA downstream 9969 10488817 ~ 10489375 (+) True G492147
CI01000340_10455853_10465771.mRNA mRNA upstream 12067 10455299 ~ 10466523 (+) True CI01000340_10455853_10465771
CI01000340_10388851_10395247.mRNA mRNA upstream 83323 10388629 ~ 10395267 (+) True CI01000340_10388851_10395247
CI01000340_10296583_10355505.mRNA mRNA upstream 122490 10296583 ~ 10356100 (+) True CI01000340_10296583_10355505
CI01000340_10252718_10253859.mRNA mRNA upstream 224137 10252718 ~ 10254453 (+) True CI01000340_10252718_10253859
CI01000340_10227896_10249819.mRNA mRNA upstream 227822 10227896 ~ 10250768 (+) True CI01000340_10227896_10249819
CI01000340_10644426_10645811.mRNA mRNA downstream 165578 10644426 ~ 10645850 (+) True CI01000340_10644426_10645811
CI01000340_10731548_10747121.mRNA mRNA downstream 251825 10730673 ~ 10747648 (+) True CI01000340_10731548_10747121
CI01000340_10781781_10785861.mRNA mRNA downstream 302620 10781468 ~ 10786351 (+) False CI01000340_10781781_10785861
CI01000340_10790372_10803993.mRNA mRNA downstream 311524 10790372 ~ 10804399 (+) True CI01000340_10790372_10803993
CI01000340_10869243_10869956.mRNA mRNA downstream 389389 10868237 ~ 10870398 (+) True CI01000340_10869243_10869956
TU563102 other upstream 633538 9831473 ~ 9845052 (+) True G490896
TU563038 other upstream 1241031 9234973 ~ 9237559 (+) True G490839
TU563018 other upstream 1347193 9125184 ~ 9131397 (+) True G490826
TU562819 other upstream 1435489 9038812 ~ 9043101 (+) True G490645
TU561697 other upstream 3777802 6694221 ~ 6700788 (+) False G489634
TU564577 other downstream 172835 10651683 ~ 10652694 (+) True G492194
TU564649 other downstream 304554 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other downstream 304808 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU565316 other downstream 1130258 11609106 ~ 11696961 (+) True G492847
TU566211 other downstream 2576544 13055392 ~ 13069652 (+) True G493617

Expression Profile