RNA id: TU564606



Basic Information


Item Value
RNA id TU564606
length 346
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G492223
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10642832 ~ 10643509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATGATGGCACACAAGGCAGTAGACAGTTTCTGAATCTCTCTGGGTCTTCGATGTAAGTTTCCAGCGCAGATATAAACTCCTGAATTATATTGGGGAATCGGGGATTCTTTCGTAGACGCTGCTGGAGTCGCTTTTGAAATATAACTTGGTCTACAGCAATTTCATTAGCCGTACTGCCAGGTGTTAAAGTGACACCTGATTCCTTCAGAAACTGAACAAAAACTGAGTCCGGGTAGGAGTCCTGTACTGAAGACTTTGTGGGTCGCCCACTGCTCTTGGTCTTTTTTGATTTTGGAATGTCAAGTGTGGAATCTTCGTCCACTGTGATGGATGAGCGCTTCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU564547 lncRNA upstream 90881 10551178 ~ 10551951 (+) True G492168
TU564543 lncRNA upstream 91790 10550628 ~ 10551042 (+) True G492167
TU564542 lncRNA upstream 92545 10549916 ~ 10550287 (+) True G492166
TU564541 lncRNA upstream 94238 10548374 ~ 10548594 (+) True G492165
TU564540 lncRNA upstream 99297 10543248 ~ 10543535 (+) True G492164
TU564609 lncRNA downstream 35841 10679350 ~ 10679596 (+) True G492226
TU564610 lncRNA downstream 36578 10680087 ~ 10680435 (+) True G492227
TU564613 lncRNA downstream 45075 10688584 ~ 10688862 (+) True G492230
TU564570 lncRNA downstream 46337 10689846 ~ 10692943 (+) True G492190
TU564635 lncRNA downstream 107138 10750647 ~ 10750873 (+) True G492249
CI01000340_10455853_10465771.mRNA mRNA upstream 176309 10455299 ~ 10466523 (+) True CI01000340_10455853_10465771
CI01000340_10388851_10395247.mRNA mRNA upstream 247565 10388629 ~ 10395267 (+) True CI01000340_10388851_10395247
CI01000340_10296583_10355505.mRNA mRNA upstream 286732 10296583 ~ 10356100 (+) True CI01000340_10296583_10355505
CI01000340_10252718_10253859.mRNA mRNA upstream 388379 10252718 ~ 10254453 (+) True CI01000340_10252718_10253859
CI01000340_10227896_10249819.mRNA mRNA upstream 392064 10227896 ~ 10250768 (+) True CI01000340_10227896_10249819
CI01000340_10644426_10645811.mRNA mRNA downstream 917 10644426 ~ 10645850 (+) True CI01000340_10644426_10645811
CI01000340_10731548_10747121.mRNA mRNA downstream 87164 10730673 ~ 10747648 (+) True CI01000340_10731548_10747121
CI01000340_10781781_10785861.mRNA mRNA downstream 137959 10781468 ~ 10786351 (+) False CI01000340_10781781_10785861
CI01000340_10790372_10803993.mRNA mRNA downstream 146863 10790372 ~ 10804399 (+) True CI01000340_10790372_10803993
CI01000340_10869243_10869956.mRNA mRNA downstream 224728 10868237 ~ 10870398 (+) True CI01000340_10869243_10869956
TU563102 other upstream 797780 9831473 ~ 9845052 (+) True G490896
TU563038 other upstream 1405273 9234973 ~ 9237559 (+) True G490839
TU563018 other upstream 1511435 9125184 ~ 9131397 (+) True G490826
TU562819 other upstream 1599731 9038812 ~ 9043101 (+) True G490645
TU561697 other upstream 3942044 6694221 ~ 6700788 (+) False G489634
TU564577 other downstream 8174 10651683 ~ 10652694 (+) True G492194
TU564649 other downstream 139893 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other downstream 140147 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU565316 other downstream 965597 11609106 ~ 11696961 (+) True G492847
TU566211 other downstream 2411883 13055392 ~ 13069652 (+) True G493617

Expression Profile