RNA id: TU564745


Basic Information

Item Value
RNA id TU564745
length 279
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G492343
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10679318 ~ 10679596 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTTCTCAATACTTAGGTCACTTTTTCAAAACTCTTCACACAGTTCTCCTAACCAACTTTCATCTTGGCACAGAGGTTAACTTCACATTCAAAATGCACCAAATCTACCAAAACACTTCATACATGTCTCAAATCAACTCATTCTTCCAGAACACTAGCAAAGGTTTTCACTGAGCAAACACACTTTGTCACTCATAAAACATCGACCTAAAAACACTAACATCAGTTAGCATTATACAATGTTTTCTTTTTTAAAATTTCTTTACAAAACAAGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564737 lncRNA downstream 207480 10471608 ~ 10471838 (-) True CI01000340_10468562_10470670
TU564416 lncRNA downstream 325369 10350057 ~ 10353949 (-) True G492047
TU564419 lncRNA downstream 339387 10329861 ~ 10339931 (-) True G492050
TU564405 lncRNA downstream 443041 10235847 ~ 10236277 (-) True G492037
TU564259 lncRNA downstream 456496 10137245 ~ 10222822 (-) True G491908
TU564768 lncRNA upstream 73132 10752728 ~ 10752946 (-) True G492364
TU564776 lncRNA upstream 101787 10781383 ~ 10784905 (-) False G492371
TU564777 lncRNA upstream 101787 10781383 ~ 10784905 (-) True G492371
TU564787 lncRNA upstream 108371 10787967 ~ 10788183 (-) True G492381
TU564759 lncRNA upstream 113663 10793259 ~ 10797269 (-) True G492356
CI01000340_10667602_10671566.mRNA mRNA downstream 7752 10667532 ~ 10671566 (-) True CI01000340_10667602_10671566
CI01000340_10664417_10665925.mRNA mRNA downstream 13393 10664104 ~ 10665925 (-) True CI01000340_10664417_10665925
CI01000340_10648767_10660257.mRNA mRNA downstream 19061 10648548 ~ 10660257 (-) True CI01000340_10648767_10660257
CI01000340_10626938_10643520.mRNA mRNA downstream 35105 10626821 ~ 10644213 (-) True CI01000340_10626938_10643520
CI01000340_10557213_10612562.mRNA mRNA downstream 66756 10557213 ~ 10612562 (-) True CI01000340_10557213_10612562
CI01000340_10690474_10697545.mRNA mRNA upstream 10336 10689932 ~ 10699591 (-) True CI01000340_10690474_10697545
CI01000340_10924696_10934000.mRNA mRNA upstream 244788 10924384 ~ 10934000 (-) True CI01000340_10924696_10934000
CI01000340_10935675_10941448.mRNA mRNA upstream 255736 10935332 ~ 10941681 (-) True CI01000340_10935675_10941448
CI01000340_10951922_10954429.mRNA mRNA upstream 272238 10951834 ~ 10954436 (-) True CI01000340_10951922_10954429
CI01000340_10962027_10966453.mRNA mRNA upstream 282128 10961724 ~ 10967360 (-) True CI01000340_10962027_10966453
TU564413 other downstream 316914 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 651335 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 1879741 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4351946 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4458676 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 994150 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1387581 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1429397 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1932620 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3533752 14213348 ~ 14320277 (-) True G494710

Expression Profile