RNA id: TU564768


Basic Information

Item Value
RNA id TU564768
length 219
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G492364
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10752728 ~ 10752946 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAAATGTCTGTTTTGTTGGCAATAGGCGCCTAAGTGCATATAATGTAAACAACACGAACGTAGTGAATTCATAAATTCATCATTCACTATACGCTATATTCATTATAGTGATTCAAAAGTTATCCATGGATAATGTGATGGTGTATTGTATGTGTTTAAATACAGTCGTTTTGCTGAAAACAAAAGCTGCACGTGCTCGTCACTCTTTAGCTCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564745 lncRNA downstream 73132 10679318 ~ 10679596 (-) True G492343
TU564737 lncRNA downstream 280890 10471608 ~ 10471838 (-) True CI01000340_10468562_10470670
TU564416 lncRNA downstream 398779 10350057 ~ 10353949 (-) True G492047
TU564419 lncRNA downstream 412797 10329861 ~ 10339931 (-) True G492050
TU564405 lncRNA downstream 516451 10235847 ~ 10236277 (-) True G492037
TU564776 lncRNA upstream 28437 10781383 ~ 10784905 (-) False G492371
TU564777 lncRNA upstream 28437 10781383 ~ 10784905 (-) True G492371
TU564787 lncRNA upstream 35021 10787967 ~ 10788183 (-) True G492381
TU564759 lncRNA upstream 40313 10793259 ~ 10797269 (-) True G492356
TU564791 lncRNA upstream 73253 10826199 ~ 10826420 (-) True G492385
CI01000340_10690474_10697545.mRNA mRNA downstream 53137 10689932 ~ 10699591 (-) True CI01000340_10690474_10697545
CI01000340_10667602_10671566.mRNA mRNA downstream 81162 10667532 ~ 10671566 (-) True CI01000340_10667602_10671566
CI01000340_10664417_10665925.mRNA mRNA downstream 86803 10664104 ~ 10665925 (-) True CI01000340_10664417_10665925
CI01000340_10648767_10660257.mRNA mRNA downstream 92471 10648548 ~ 10660257 (-) True CI01000340_10648767_10660257
CI01000340_10626938_10643520.mRNA mRNA downstream 108515 10626821 ~ 10644213 (-) True CI01000340_10626938_10643520
CI01000340_10924696_10934000.mRNA mRNA upstream 171438 10924384 ~ 10934000 (-) True CI01000340_10924696_10934000
CI01000340_10935675_10941448.mRNA mRNA upstream 182386 10935332 ~ 10941681 (-) True CI01000340_10935675_10941448
CI01000340_10951922_10954429.mRNA mRNA upstream 198888 10951834 ~ 10954436 (-) True CI01000340_10951922_10954429
CI01000340_10962027_10966453.mRNA mRNA upstream 208778 10961724 ~ 10967360 (-) True CI01000340_10962027_10966453
CI01000340_10980323_10984372.mRNA mRNA upstream 227140 10980086 ~ 10984372 (-) True CI01000340_10980323_10984372
TU564413 other downstream 390324 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 724745 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 1953151 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4425356 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4532086 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 920800 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1314231 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1356047 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1859270 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3460402 14213348 ~ 14320277 (-) True G494710

Expression Profile