RNA id: TU564759


Basic Information

Item Value
RNA id TU564759
length 174
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G492356
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10793259 ~ 10797269 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTGTCGGGCTGGATATATTTGAGCAGAGCAGTCTTGTCACCAACCTTAACAGATCCCTTGTTGGACTCCATGAAGTGGACAGCATCCTCGAGGTTTAAAAACTCCACATAGGCCGTATCGTAGCTGTAACCTGGCACAACGTCTTTTATTTTCATGCCCTGCATTGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564787 lncRNA downstream 5076 10787967 ~ 10788183 (-) True G492381
TU564776 lncRNA downstream 8354 10781383 ~ 10784905 (-) False G492371
TU564777 lncRNA downstream 8354 10781383 ~ 10784905 (-) True G492371
TU564768 lncRNA downstream 40313 10752728 ~ 10752946 (-) True G492364
TU564745 lncRNA downstream 113663 10679318 ~ 10679596 (-) True G492343
TU564791 lncRNA upstream 28930 10826199 ~ 10826420 (-) True G492385
TU564798 lncRNA upstream 44184 10841453 ~ 10841670 (-) True G492392
TU564806 lncRNA upstream 63162 10860431 ~ 10860700 (-) True G492400
TU564960 lncRNA upstream 118053 10915322 ~ 10916667 (-) True G492551
TU565002 lncRNA upstream 162544 10959813 ~ 10960064 (-) True G492586
CI01000340_10690474_10697545.mRNA mRNA downstream 93668 10689932 ~ 10699591 (-) True CI01000340_10690474_10697545
CI01000340_10667602_10671566.mRNA mRNA downstream 121693 10667532 ~ 10671566 (-) True CI01000340_10667602_10671566
CI01000340_10664417_10665925.mRNA mRNA downstream 127334 10664104 ~ 10665925 (-) True CI01000340_10664417_10665925
CI01000340_10648767_10660257.mRNA mRNA downstream 133002 10648548 ~ 10660257 (-) True CI01000340_10648767_10660257
CI01000340_10626938_10643520.mRNA mRNA downstream 149046 10626821 ~ 10644213 (-) True CI01000340_10626938_10643520
CI01000340_10924696_10934000.mRNA mRNA upstream 127115 10924384 ~ 10934000 (-) True CI01000340_10924696_10934000
CI01000340_10935675_10941448.mRNA mRNA upstream 138063 10935332 ~ 10941681 (-) True CI01000340_10935675_10941448
CI01000340_10951922_10954429.mRNA mRNA upstream 154565 10951834 ~ 10954436 (-) True CI01000340_10951922_10954429
CI01000340_10962027_10966453.mRNA mRNA upstream 164455 10961724 ~ 10967360 (-) True CI01000340_10962027_10966453
CI01000340_10980323_10984372.mRNA mRNA upstream 182817 10980086 ~ 10984372 (-) True CI01000340_10980323_10984372
TU564413 other downstream 430855 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 765276 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 1993682 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4465887 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4572617 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 876477 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1269908 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1311724 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1814947 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3416079 14213348 ~ 14320277 (-) True G494710

Expression Profile