RNA id: TU564806


Basic Information

Item Value
RNA id TU564806
length 270
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G492400
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10860431 ~ 10860700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCATTCGAGGGATCTACCCACATGTTGTTAAAGTTTGGTTATTTAAAAAAATTATAATAAATATTAATAAAGCAAGATGCTCCGTTGAAATATGTGAGATGTAAAGTTTATTTAAACTGCAAAAGTAAAGCATACATTTAAATTATTGTGACAGATATGAAGGGGGAGGAAAATGTATACGTGCGTCACGTTTCTCGAGGAGAAAGACTTCCGCAAAGGATGCACCTGTGTATCCTCGCTCATGACTCCTCAGGAAGCTTCCTCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564798 lncRNA downstream 18761 10841453 ~ 10841670 (-) True G492392
TU564791 lncRNA downstream 34011 10826199 ~ 10826420 (-) True G492385
TU564759 lncRNA downstream 63162 10793259 ~ 10797269 (-) True G492356
TU564787 lncRNA downstream 72248 10787967 ~ 10788183 (-) True G492381
TU564776 lncRNA downstream 75526 10781383 ~ 10784905 (-) False G492371
TU564960 lncRNA upstream 54622 10915322 ~ 10916667 (-) True G492551
TU565002 lncRNA upstream 99113 10959813 ~ 10960064 (-) True G492586
TU565016 lncRNA upstream 164232 11024932 ~ 11025149 (-) True G492600
TU565019 lncRNA upstream 168764 11029464 ~ 11029680 (-) True G492603
TU565038 lncRNA upstream 197582 11058282 ~ 11058772 (-) True G492619
CI01000340_10690474_10697545.mRNA mRNA downstream 160840 10689932 ~ 10699591 (-) True CI01000340_10690474_10697545
CI01000340_10667602_10671566.mRNA mRNA downstream 188865 10667532 ~ 10671566 (-) True CI01000340_10667602_10671566
CI01000340_10664417_10665925.mRNA mRNA downstream 194506 10664104 ~ 10665925 (-) True CI01000340_10664417_10665925
CI01000340_10648767_10660257.mRNA mRNA downstream 200174 10648548 ~ 10660257 (-) True CI01000340_10648767_10660257
CI01000340_10626938_10643520.mRNA mRNA downstream 216218 10626821 ~ 10644213 (-) True CI01000340_10626938_10643520
CI01000340_10924696_10934000.mRNA mRNA upstream 63684 10924384 ~ 10934000 (-) True CI01000340_10924696_10934000
CI01000340_10935675_10941448.mRNA mRNA upstream 74632 10935332 ~ 10941681 (-) True CI01000340_10935675_10941448
CI01000340_10951922_10954429.mRNA mRNA upstream 91134 10951834 ~ 10954436 (-) True CI01000340_10951922_10954429
CI01000340_10962027_10966453.mRNA mRNA upstream 101024 10961724 ~ 10967360 (-) True CI01000340_10962027_10966453
CI01000340_10980323_10984372.mRNA mRNA upstream 119386 10980086 ~ 10984372 (-) True CI01000340_10980323_10984372
TU564413 other downstream 498027 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 832448 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 2060854 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4533059 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4639789 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 813046 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1206477 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1248293 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1751516 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3352648 14213348 ~ 14320277 (-) True G494710

Expression Profile