RNA id: TU564808


Basic Information

Item Value
RNA id TU564808
length 236
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G492402
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10863820 ~ 10864055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACATATTTGGCTTTGTGAAACGCACCACAGAACGTTACTGACAGATTGGGAAGAGAGGTGCTGCAACAATGTAAAATATGTGAAAAATAATTTTTTTTTTTTTTTTTTTTTTGAACATTCAAGCATGAAAACCTATTCTAGTAGACCCCAAAACAAATTCAAGTCTTTGTAAAAGGGCATAATAGGTCTTCATTAAATATAACTGTATTTTTTTCACCCCACTGTGTTCGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564805 lncRNA upstream 3118 10860439 ~ 10860702 (+) True G492399
TU564635 lncRNA upstream 112947 10750647 ~ 10750873 (+) True G492249
TU564570 lncRNA upstream 170877 10689846 ~ 10692943 (+) True G492190
TU564613 lncRNA upstream 174958 10688584 ~ 10688862 (+) True G492230
TU564610 lncRNA upstream 183385 10680087 ~ 10680435 (+) True G492227
TU564825 lncRNA downstream 51709 10915764 ~ 10916710 (+) False CI01000340_10915894_10921086
TU564831 lncRNA downstream 53634 10917689 ~ 10918297 (+) True CI01000340_10915894_10921086
TU564824 lncRNA downstream 63054 10927109 ~ 10927501 (+) True G492416
TU564828 lncRNA downstream 66511 10930566 ~ 10931507 (+) True G492420
TU564812 lncRNA downstream 70795 10934850 ~ 10936632 (+) True G492405
CI01000340_10790372_10803993.mRNA mRNA upstream 59421 10790372 ~ 10804399 (+) True CI01000340_10790372_10803993
CI01000340_10781781_10785861.mRNA mRNA upstream 77469 10781468 ~ 10786351 (+) False CI01000340_10781781_10785861
CI01000340_10731548_10747121.mRNA mRNA upstream 116172 10730673 ~ 10747648 (+) True CI01000340_10731548_10747121
CI01000340_10644426_10645811.mRNA mRNA upstream 217970 10644426 ~ 10645850 (+) True CI01000340_10644426_10645811
CI01000340_10455853_10465771.mRNA mRNA upstream 397297 10455299 ~ 10466523 (+) True CI01000340_10455853_10465771
CI01000340_10869243_10869956.mRNA mRNA downstream 4182 10868237 ~ 10870398 (+) True CI01000340_10869243_10869956
CI01000340_10882106_10884072.mRNA mRNA downstream 16916 10880971 ~ 10884198 (+) True CI01000340_10882106_10884072
CI01000340_10896398_10912573.mRNA mRNA downstream 32179 10896234 ~ 10912704 (+) True CI01000340_10896398_10912573
CI01000340_10915894_10921086.mRNA mRNA downstream 51839 10915894 ~ 10921200 (+) False CI01000340_10915894_10921086
CI01000340_10975991_10979709.mRNA mRNA downstream 111256 10975311 ~ 10980045 (+) True CI01000340_10975991_10979709
TU564649 other upstream 76028 10783402 ~ 10787792 (+) False CI01000340_10781781_10785861
TU564645 other upstream 76028 10783656 ~ 10787792 (+) True CI01000340_10781781_10785861
TU564577 other upstream 211126 10651683 ~ 10652694 (+) True G492194
TU563102 other upstream 1018768 9831473 ~ 9845052 (+) True G490896
TU563038 other upstream 1626261 9234973 ~ 9237559 (+) True G490839
TU565316 other downstream 745051 11609106 ~ 11696961 (+) True G492847
TU566211 other downstream 2191337 13055392 ~ 13069652 (+) True G493617
TU566345 other downstream 2651172 13515227 ~ 13517111 (+) True G493740
TU566400 other downstream 2958139 13822194 ~ 13923213 (+) True G493782
TU567022 other downstream 3233576 14097631 ~ 14097890 (+) True G494346

Expression Profile