RNA id: TU565567


Basic Information

Item Value
RNA id TU565567
length 277
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G493066
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 11513702 ~ 11513978 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAAGAGAAATAATTAGACTAGGTTGCCAAGGAGCCGGAGAGCATGTGGCTGTGCTATTTGAAAGAAACTGAAGATGAAATACTTTTTTTTTTTTTTTTTTTTTTTTGGCTAATGCCCTAAATACCATTCAGTTCAGAGTTTGAGCATTTCAGCCATGAACTTGTTTGCACACACCCTGCACACCACTAACACTTCAAAAATCCATCAACACTTGTGCAAAATGTGTAAGCTTACATGTTCAGAAATAACATGCATAAGAAATGTTTTATTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565554 lncRNA downstream 12205 11500980 ~ 11501497 (-) True G493057
TU565508 lncRNA downstream 52347 11459049 ~ 11461355 (-) True G493017
TU565055 lncRNA downstream 414377 11096654 ~ 11099325 (-) True G492627
TU565060 lncRNA downstream 435861 11077636 ~ 11077841 (-) True G492630
TU565038 lncRNA downstream 454930 11058282 ~ 11058772 (-) True G492619
TU565575 lncRNA upstream 16255 11530233 ~ 11530567 (-) True G493074
TU565576 lncRNA upstream 16947 11530925 ~ 11531183 (-) True G493075
TU565626 lncRNA upstream 136743 11650721 ~ 11662939 (-) True G493110
TU565678 lncRNA upstream 367057 11881035 ~ 11881508 (-) True G493157
TU565561 lncRNA upstream 469085 11983063 ~ 11983698 (-) True G493060
CI01000340_11450930_11478248.mRNA mRNA downstream 35259 11450759 ~ 11478443 (-) True CI01000340_11450930_11478248
CI01000340_11317716_11330576.mRNA mRNA downstream 182212 11317407 ~ 11331490 (-) True CI01000340_11317716_11330576
CI01000340_11283491_11314856.mRNA mRNA downstream 198846 11283128 ~ 11314856 (-) True CI01000340_11283491_11314856
CI01000340_11219006_11225062.mRNA mRNA downstream 288640 11218574 ~ 11225062 (-) True CI01000340_11219006_11225062
CI01000340_11185627_11192539.mRNA mRNA downstream 321163 11184104 ~ 11192539 (-) True CI01000340_11185627_11192539
CI01000340_11553900_11576481.mRNA mRNA upstream 38402 11552380 ~ 11576827 (-) True CI01000340_11553900_11576481
CI01000340_11609366_11648905.mRNA mRNA upstream 95388 11609366 ~ 11648905 (-) True CI01000340_11609366_11648905
CI01000340_11679110_11679311.mRNA mRNA upstream 164858 11678836 ~ 11679311 (-) True CI01000340_11679110_11679311
CI01000340_11695434_11705476.mRNA mRNA upstream 180697 11694675 ~ 11705798 (-) True CI01000340_11695434_11705476
CI01000340_11779096_11787055.mRNA mRNA upstream 265113 11779091 ~ 11788759 (-) True CI01000340_11779096_11787055
TU564413 other downstream 1151298 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 1485719 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 2714125 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 5186330 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 5293060 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 159768 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 553199 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 595015 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1098238 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 2699370 14213348 ~ 14320277 (-) True G494710

Expression Profile