RNA id: TU565717


Basic Information

Item Value
RNA id TU565717
length 390
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G493196
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12012855 ~ 12013244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAATGAAGAGCAAAAGTCGCCATCATGATTCTATGCTGTTGGGAATATTATATACATATACATACAGTCAAACCAAAATGTATTCAGACACCTTGAACATTTCATTCATTAATACAGTTTATTCACTATAGTTTAAAAAAATGGTAATAAAATATGACAAGATCTCAGAGATAAACTATGTAAGAAAAAAATTAATCTTAATTATGTCAGATAACACTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTTCCAAATTTTTTTGTCAATTTTACTGGTAGTCCACTGTATGAAGAATTTTTGGGTATAATATGTCACAGTTTACTTTATTTTGCTATCCTCACTTACATAAATGAACTATAGTGTCCTGCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU565561 lncRNA downstream 29157 11983063 ~ 11983698 (-) True G493060
TU565678 lncRNA downstream 131347 11881035 ~ 11881508 (-) True G493157
TU565626 lncRNA downstream 349916 11650721 ~ 11662939 (-) True G493110
TU565576 lncRNA downstream 481672 11530925 ~ 11531183 (-) True G493075
TU565575 lncRNA downstream 482288 11530233 ~ 11530567 (-) True G493074
TU565799 lncRNA upstream 9688 12022932 ~ 12086740 (-) True G493267
TU565800 lncRNA upstream 11252 12024496 ~ 12025256 (-) True G493268
TU565794 lncRNA upstream 92403 12105647 ~ 12109609 (-) False G493266
TU565845 lncRNA upstream 117390 12130634 ~ 12131075 (-) True G493309
TU565847 lncRNA upstream 119927 12133171 ~ 12134253 (-) True G493311
CI01000340_11903883_11956886.mRNA mRNA downstream 55969 11903780 ~ 11956886 (-) True CI01000340_11903883_11956886
CI01000340_11779096_11787055.mRNA mRNA downstream 224096 11779091 ~ 11788759 (-) True CI01000340_11779096_11787055
CI01000340_11695434_11705476.mRNA mRNA downstream 307057 11694675 ~ 11705798 (-) True CI01000340_11695434_11705476
CI01000340_11679110_11679311.mRNA mRNA downstream 333544 11678836 ~ 11679311 (-) True CI01000340_11679110_11679311
CI01000340_11609366_11648905.mRNA mRNA downstream 363950 11609366 ~ 11648905 (-) True CI01000340_11609366_11648905
CI01000340_12515377_12519838.mRNA mRNA upstream 501502 12514746 ~ 12519980 (-) True CI01000340_12515377_12519838
CI01000340_12532321_12545278.mRNA mRNA upstream 518995 12532239 ~ 12545388 (-) True CI01000340_12532321_12545278
CI01000340_12562841_12563343.mRNA mRNA upstream 549349 12562593 ~ 12563343 (-) True CI01000340_12562841_12563343
CI01000340_12571142_12574655.mRNA mRNA upstream 557777 12571021 ~ 12574678 (-) True CI01000340_12571142_12574655
CI01000340_12577571_12625562.mRNA mRNA upstream 564191 12577435 ~ 12625758 (-) False CI01000340_12577571_12625562
TU565620 other downstream 334861 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 1650451 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 1984872 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 3213278 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 5685483 6320457 ~ 6327372 (-) True G489511
TU565796 other upstream 53933 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 95749 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 598972 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 2200104 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 2200104 14213348 ~ 14320277 (-) False G494710

Expression Profile